ZNF345

zinc finger protein 345, the group of Zinc fingers C2H2-type

Basic information

Region (hg38): 19:36850360-36913029

Links

ENSG00000251247 ∙ NCBI:25850 ∙ ∙ HGNC:16367 ∙ Uniprot:Q14585 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the ZNF345 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the ZNF345 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous					1	1
missense			28	1	1	30
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	28	1	2

Variants in ZNF345

This is a list of pathogenic ClinVar variants found in the ZNF345 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
19-36876970-C-G		not specified	Uncertain significance (Sep 22, 2023)
19-36877015-T-G		not specified	Uncertain significance (May 30, 2024)
19-36877066-G-A		not specified	Uncertain significance (Dec 27, 2023)
19-36877128-G-C		not specified	Uncertain significance (May 23, 2024)
19-36877144-T-A		not specified	Uncertain significance (Nov 01, 2022)
19-36877198-G-A		not specified	Uncertain significance (Jan 08, 2024)
19-36877271-G-C		not specified	Uncertain significance (Jul 09, 2021)
19-36877272-T-A		not specified	Uncertain significance (Jul 09, 2021)
19-36877297-G-C		not specified	Uncertain significance (Oct 29, 2021)
19-36877347-C-G		not specified	Uncertain significance (Aug 13, 2021)
19-36877399-T-C		not specified	Likely benign (Dec 17, 2023)
19-36877401-C-T		not specified	Uncertain significance (Apr 25, 2023)
19-36877445-A-G		not specified	Uncertain significance (May 13, 2024)
19-36877465-G-A		not specified	Uncertain significance (Oct 05, 2023)
19-36877492-G-A		not specified	Uncertain significance (Oct 04, 2022)
19-36877494-C-T		not specified	Uncertain significance (Feb 27, 2024)
19-36877515-C-T		not specified	Uncertain significance (Nov 22, 2021)
19-36877530-G-C		not specified	Uncertain significance (Jan 31, 2024)
19-36877588-C-G		not specified	Uncertain significance (Oct 10, 2023)
19-36877633-G-C			Benign (Dec 31, 2019)
19-36877656-C-T		not specified	Uncertain significance (Oct 05, 2023)
19-36877668-C-A		not specified	Uncertain significance (Sep 17, 2021)
19-36877771-A-T		not specified	Uncertain significance (Aug 28, 2023)
19-36877891-G-A		not specified	Uncertain significance (Nov 15, 2021)
19-36877945-G-A		not specified	Uncertain significance (Jan 23, 2024)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
ZNF345	protein_coding	protein_coding	ENST00000529555	1	62669

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
1.43e-8	0.214	125575	0	158	125733	0.000629

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	0.822	224	261	0.857	0.0000125	3269
Missense in Polyphen		63	88.264	0.71377		1101
Synonymous	0.920	74	84.8	0.873	0.00000395	849
Loss of Function	0.409	13	14.7	0.885	8.99e-7	209

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.00600	0.00599
Ashkenazi Jewish	0.0000992	0.0000992
East Asian	0.00	0.00
Finnish	0.0000462	0.0000462
European (Non-Finnish)	0.000185	0.000185
Middle Eastern	0.00	0.00
South Asian	0.0000653	0.0000653
Other	0.000818	0.000815

dbNSFP

Source: dbNSFP

• Function: FUNCTION: May be involved in transcriptional regulation.

Intolerance Scores

• rvis_EVS: -0.14
• rvis_percentile_EVS: 43.77

Haploinsufficiency Scores

• pHI: 0.135
• hipred: N
• hipred_score: 0.168
• ghis: 0.567

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: N
• gene_indispensability_score: 0.189

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Gene ontology

• Biological process: negative regulation of transcription by RNA polymerase II;regulation of transcription by RNA polymerase III;transcription by RNA polymerase II;transcription by RNA polymerase III;negative regulation of transcription, DNA-templated;positive regulation of transcription, DNA-templated;positive regulation of transcription by RNA polymerase II
• Cellular component: nucleus;nucleoplasm
• Molecular function: DNA-binding transcription factor activity, RNA polymerase II-specific;DNA-binding transcription factor activity;sequence-specific DNA binding;metal ion binding