ZNF347

zinc finger protein 347, the group of Zinc fingers C2H2-type

Basic information

Region (hg38): 19:53124072-53159075

Links

ENSG00000197937 ∙ NCBI:84671 ∙ ∙ HGNC:16447 ∙ Uniprot:Q96SE7 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the ZNF347 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the ZNF347 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			70	5		75
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	70	5	0

Variants in ZNF347

This is a list of pathogenic ClinVar variants found in the ZNF347 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
19-53140329-G-C		not specified	Uncertain significance (Jan 10, 2022)
19-53140364-C-T		not specified	Uncertain significance (Dec 09, 2023)
19-53140463-C-T		not specified	Likely benign (May 10, 2022)
19-53140468-T-A		not specified	Uncertain significance (Nov 03, 2023)
19-53140493-T-C		not specified	Uncertain significance (Feb 08, 2023)
19-53140570-G-T		not specified	Uncertain significance (Oct 12, 2022)
19-53140606-T-C		not specified	Uncertain significance (Sep 22, 2023)
19-53140666-C-T		not specified	Uncertain significance (Nov 18, 2022)
19-53140696-C-T		not specified	Uncertain significance (Feb 27, 2025)
19-53140715-C-G		not specified	Uncertain significance (Dec 09, 2023)
19-53140762-G-A		not specified	Uncertain significance (Jan 23, 2024)
19-53140765-T-C		not specified	Likely benign (Oct 12, 2024)
19-53140768-C-T		not specified	Uncertain significance (Jan 18, 2025)
19-53140787-A-T		not specified	Uncertain significance (Sep 22, 2023)
19-53140813-C-T		not specified	Likely benign (Dec 21, 2022)
19-53140814-G-C		not specified	Uncertain significance (Jul 05, 2024)
19-53140816-T-C		not specified	Uncertain significance (Jun 22, 2024)
19-53140823-C-T		not specified	Uncertain significance (Jul 16, 2024)
19-53140826-G-A		not specified	Uncertain significance (Sep 26, 2022)
19-53140871-A-G		not specified	Uncertain significance (Jan 16, 2025)
19-53140918-T-C		not specified	Uncertain significance (Feb 27, 2025)
19-53140919-G-A		not specified	Uncertain significance (Dec 06, 2022)
19-53140931-C-A		not specified	Uncertain significance (Apr 08, 2024)
19-53140943-C-T		not specified	Uncertain significance (Nov 07, 2022)
19-53140969-G-A		not specified	Uncertain significance (Mar 27, 2023)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
ZNF347	protein_coding	protein_coding	ENST00000452676	4	35004

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.0000546	0.272	125672	0	60	125732	0.000239

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	-1.21	497	426	1.17	0.0000214	5535
Missense in Polyphen		139	117.02	1.1878		1601
Synonymous	-0.148	153	151	1.02	0.00000757	1509
Loss of Function	-0.307	6	5.24	1.15	2.23e-7	59

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.000121	0.000121
Ashkenazi Jewish	0.000694	0.000695
East Asian	0.00	0.00
Finnish	0.00	0.00
European (Non-Finnish)	0.000397	0.000396
Middle Eastern	0.00	0.00
South Asian	0.000131	0.000131
Other	0.000164	0.000163

dbNSFP

Source: dbNSFP

• Function: FUNCTION: May be involved in transcriptional regulation.
• Pathway: Gene expression (Transcription);Generic Transcription Pathway;RNA Polymerase II Transcription (Consensus)

Intolerance Scores

• loftool: 0.954
• rvis_EVS: -0.55
• rvis_percentile_EVS: 19.93

Haploinsufficiency Scores

• pHI: 0.0611
• hipred: N
• hipred_score: 0.112
• ghis: 0.557

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: S
• essential_gene_gene_trap: N
• gene_indispensability_pred: N
• gene_indispensability_score: 0.141

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Gene ontology

• Biological process: regulation of transcription by RNA polymerase II
• Cellular component: nucleus
• Molecular function: DNA-binding transcription factor activity, RNA polymerase II-specific;DNA binding;metal ion binding