ZNF362

zinc finger protein 362, the group of Zinc fingers C2H2-type

Basic information

Region (hg38): 1:33256491-33300719

Links

ENSG00000160094 ∙ NCBI:149076 ∙ ∙ HGNC:18079 ∙ Uniprot:Q5T0B9 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the ZNF362 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the ZNF362 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous				1		1
missense			12			12
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	12	1	0

Variants in ZNF362

This is a list of pathogenic ClinVar variants found in the ZNF362 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
1-33276430-C-T		not specified	Uncertain significance (Sep 14, 2023)
1-33276436-C-T		not specified	Uncertain significance (Sep 27, 2021)
1-33276471-G-A		not specified	Uncertain significance (Jul 07, 2022)
1-33276482-C-G		not specified	Uncertain significance (Mar 16, 2023)
1-33276489-G-A		not specified	Uncertain significance (Jul 14, 2022)
1-33280205-C-T		not specified	Uncertain significance (Nov 22, 2021)
1-33280379-C-T		not specified	Uncertain significance (Jun 21, 2023)
1-33280385-G-T		not specified	Uncertain significance (Feb 23, 2023)
1-33281702-G-A		not specified	Uncertain significance (Dec 20, 2023)
1-33294995-A-G		not specified	Uncertain significance (Jun 05, 2024)
1-33299006-C-T		not specified	Uncertain significance (Nov 06, 2023)
1-33299016-C-T			Likely benign (May 01, 2022)
1-33299017-G-C		not specified	Uncertain significance (Dec 15, 2022)
1-33299038-C-T		not specified	Uncertain significance (Nov 12, 2021)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
ZNF362	protein_coding	protein_coding	ENST00000539719	8	44175

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.941	0.0588	125719	0	2	125721	0.00000795

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	2.73	135	258	0.522	0.0000165	2678
Missense in Polyphen		44	112.76	0.39022		1119
Synonymous	0.227	120	123	0.974	0.00000937	863
Loss of Function	3.47	2	17.8	0.112	8.25e-7	216

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.0000289	0.0000289
Ashkenazi Jewish	0.00	0.00
East Asian	0.00	0.00
Finnish	0.00	0.00
European (Non-Finnish)	0.00000881	0.00000879
Middle Eastern	0.00	0.00
South Asian	0.00	0.00
Other	0.00	0.00

dbNSFP

Source: dbNSFP

• Function: FUNCTION: May be involved in transcriptional regulation.

Recessive Scores

• pRec: 0.111

Intolerance Scores

• loftool: 0.0546
• rvis_EVS: 0.04
• rvis_percentile_EVS: 56.92

Haploinsufficiency Scores

• pHI: 0.717
• hipred: Y
• hipred_score: 0.662
• ghis: 0.550

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• gene_indispensability_pred: N
• gene_indispensability_score: 0.450

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Zfp362

Gene ontology

• Biological process: regulation of transcription by RNA polymerase II
• Cellular component: nucleus
• Molecular function: DNA-binding transcription factor activity, RNA polymerase II-specific;DNA binding;metal ion binding