ZNF37A

zinc finger protein 37A, the group of Zinc fingers C2H2-type

Basic information

Region (hg38): 10:38094334-38150293

Links

ENSG00000075407 ∙ NCBI:7587 ∙ OMIM:616085 ∙ HGNC:13102 ∙ Uniprot:P17032 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

• Tourette syndrome (No Known Disease Relationship), mode of inheritance: Unknown

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the ZNF37A gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the ZNF37A gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			33			33
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	33	0	0

Variants in ZNF37A

This is a list of pathogenic ClinVar variants found in the ZNF37A region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
10-38115247-G-T		not specified	Uncertain significance (Jan 23, 2023)
10-38117404-A-G		not specified	Uncertain significance (Mar 02, 2023)
10-38117432-A-G		not specified	Uncertain significance (Jan 04, 2022)
10-38117434-G-A		not specified	Uncertain significance (Oct 12, 2022)
10-38117436-G-T		not specified	Uncertain significance (Feb 13, 2024)
10-38117480-T-A		not specified	Uncertain significance (Aug 21, 2023)
10-38117500-C-T		not specified	Uncertain significance (Mar 07, 2024)
10-38117530-T-G		not specified	Uncertain significance (May 24, 2023)
10-38117573-A-G		not specified	Uncertain significance (Sep 20, 2023)
10-38117582-A-G		not specified	Uncertain significance (May 30, 2023)
10-38117641-C-T		not specified	Uncertain significance (Jan 29, 2024)
10-38117762-A-T		not specified	Uncertain significance (Jan 04, 2022)
10-38117885-A-G		not specified	Uncertain significance (Oct 20, 2021)
10-38117897-G-A		not specified	Uncertain significance (May 09, 2023)
10-38118034-G-C		not specified	Uncertain significance (Mar 06, 2023)
10-38118044-C-G		not specified	Uncertain significance (Feb 27, 2023)
10-38118179-C-T		not specified	Uncertain significance (Jun 17, 2024)
10-38118194-C-T		not specified	Uncertain significance (Jan 31, 2024)
10-38118203-G-A		not specified	Uncertain significance (Jan 03, 2024)
10-38118226-G-C		not specified	Uncertain significance (Apr 25, 2022)
10-38118266-T-C		not specified	Uncertain significance (May 23, 2023)
10-38118266-T-G		not specified	Uncertain significance (May 26, 2024)
10-38118328-C-G		not specified	Uncertain significance (Jun 30, 2022)
10-38118368-C-T		not specified	Uncertain significance (Apr 05, 2023)
10-38118401-G-A		not specified	Uncertain significance (Sep 23, 2023)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
ZNF37A	protein_coding	protein_coding	ENST00000361085	4	31209

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
1.30e-9	0.346	125582	0	145	125727	0.000577

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	-0.0822	288	284	1.01	0.0000127	3726
Missense in Polyphen		115	127.56	0.90153		1637
Synonymous	0.620	94	102	0.922	0.00000486	967
Loss of Function	0.871	16	20.2	0.791	8.42e-7	310

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.00197	0.00197
Ashkenazi Jewish	0.0000994	0.0000992
East Asian	0.00158	0.00158
Finnish	0.0000924	0.0000924
European (Non-Finnish)	0.000336	0.000334
Middle Eastern	0.00158	0.00158
South Asian	0.000525	0.000523
Other	0.000327	0.000326

dbNSFP

Source: dbNSFP

• Function: FUNCTION: May be involved in transcriptional regulation.
• Pathway: Gene expression (Transcription);Generic Transcription Pathway;RNA Polymerase II Transcription (Consensus)

Recessive Scores

• pRec: 0.0957

Intolerance Scores

• loftool: 0.970
• rvis_EVS: 0.09
• rvis_percentile_EVS: 60.57

Haploinsufficiency Scores

• pHI: 0.127
• hipred: N
• hipred_score: 0.112
• ghis: 0.538

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: N
• gene_indispensability_score: 0.234

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Gene ontology

• Biological process: regulation of transcription, DNA-templated;regulation of transcription by RNA polymerase II
• Cellular component: nucleus
• Molecular function: DNA-binding transcription factor activity, RNA polymerase II-specific;DNA binding;DNA-binding transcription factor activity;metal ion binding