ZNF382

zinc finger protein 382, the group of Zinc fingers C2H2-type

Basic information

Region (hg38): 19:36604816-36634114

Links

ENSG00000161298 ∙ NCBI:84911 ∙ OMIM:609516 ∙ HGNC:17409 ∙ Uniprot:Q96SR6 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the ZNF382 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the ZNF382 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			25			25
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	25	0	0

Variants in ZNF382

This is a list of pathogenic ClinVar variants found in the ZNF382 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
19-36609989-C-A		not specified	Uncertain significance (Oct 26, 2022)
19-36610673-A-G		not specified	Uncertain significance (Apr 04, 2023)
19-36610674-T-G		not specified	Uncertain significance (Jul 12, 2022)
19-36610680-G-A		not specified	Uncertain significance (Feb 23, 2023)
19-36610724-C-G		not specified	Uncertain significance (Oct 26, 2022)
19-36626135-G-T		not specified	Uncertain significance (Dec 11, 2023)
19-36626151-A-G		not specified	Uncertain significance (Dec 03, 2021)
19-36626233-G-C		not specified	Uncertain significance (Mar 03, 2022)
19-36626384-G-A		not specified	Uncertain significance (Sep 22, 2023)
19-36626429-A-G		not specified	Uncertain significance (Apr 09, 2024)
19-36626560-C-G		not specified	Uncertain significance (Feb 14, 2023)
19-36626634-G-A		not specified	Uncertain significance (Oct 05, 2023)
19-36626643-T-G		not specified	Uncertain significance (May 23, 2024)
19-36626682-T-C		not specified	Uncertain significance (Nov 08, 2021)
19-36626748-T-C		not specified	Uncertain significance (Dec 16, 2023)
19-36626757-A-C		not specified	Uncertain significance (Oct 26, 2022)
19-36626831-A-G		not specified	Uncertain significance (Jan 04, 2022)
19-36626981-C-T		not specified	Uncertain significance (Jan 04, 2022)
19-36627226-G-T		not specified	Uncertain significance (Sep 06, 2022)
19-36627317-C-T		not specified	Uncertain significance (Feb 14, 2023)
19-36627318-G-A		not specified	Uncertain significance (Dec 27, 2023)
19-36627372-A-G		not specified	Uncertain significance (May 03, 2023)
19-36627380-C-G		not specified	Uncertain significance (Oct 26, 2021)
19-36627381-C-T		not specified	Uncertain significance (Apr 19, 2024)
19-36627405-G-A		not specified	Uncertain significance (Jan 23, 2024)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
ZNF382	protein_coding	protein_coding	ENST00000292928	3	23781

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.0294	0.969	125723	0	23	125746	0.0000915

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	1.49	215	286	0.752	0.0000139	3675
Missense in Polyphen		79	124.76	0.63324		1610
Synonymous	-0.0375	102	102	1.00	0.00000508	968
Loss of Function	2.72	6	18.7	0.322	8.67e-7	280

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.0000579	0.0000579
Ashkenazi Jewish	0.000337	0.000298
East Asian	0.000328	0.000326
Finnish	0.00	0.00
European (Non-Finnish)	0.0000798	0.0000791
Middle Eastern	0.000328	0.000326
South Asian	0.000108	0.0000980
Other	0.00	0.00

dbNSFP

Source: dbNSFP

• Function: FUNCTION: Functions as a sequence-specific transcriptional repressor. {ECO:0000250}.
• Pathway: Gene expression (Transcription);Generic Transcription Pathway;RNA Polymerase II Transcription (Consensus)

Recessive Scores

• pRec: 0.104

Intolerance Scores

• loftool: 0.616
• rvis_EVS: 0.8
• rvis_percentile_EVS: 87.49

Haploinsufficiency Scores

• pHI: 0.176
• hipred: Y
• hipred_score: 0.633
• ghis: 0.482

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: N
• gene_indispensability_score: 0.316

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Zfp382

Gene ontology

• Biological process: regulation of transcription by RNA polymerase II
• Cellular component: nucleus
• Molecular function: DNA-binding transcription factor activity, RNA polymerase II-specific;DNA binding;metal ion binding