ZNF432

zinc finger protein 432, the group of Zinc fingers C2H2-type

Basic information

Region (hg38): 19:52031378-52095738

Links

ENSG00000256087 ∙ NCBI:9668 ∙ ∙ HGNC:20810 ∙ Uniprot:O94892 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the ZNF432 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the ZNF432 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			35	2	1	38
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	35	2	1

Variants in ZNF432

This is a list of pathogenic ClinVar variants found in the ZNF432 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
19-52033751-T-A		not specified	Uncertain significance (Nov 09, 2023)
19-52033779-A-T		not specified	Uncertain significance (Dec 06, 2021)
19-52033829-C-T		not specified	Uncertain significance (Jun 07, 2023)
19-52033839-C-G		not specified	Uncertain significance (May 17, 2023)
19-52033847-C-T		not specified	Uncertain significance (Oct 06, 2021)
19-52033981-C-G		not specified	Uncertain significance (Apr 18, 2024)
19-52033998-G-C		not specified	Uncertain significance (Jan 04, 2022)
19-52034013-G-C		not specified	Uncertain significance (Jan 04, 2022)
19-52034033-C-T		not specified	Uncertain significance (Jun 29, 2023)
19-52034079-T-C		not specified	Uncertain significance (Mar 26, 2024)
19-52034081-C-T			Benign (Dec 31, 2019)
19-52034184-C-T		not specified	Uncertain significance (Apr 09, 2024)
19-52034249-C-T		not specified	Uncertain significance (Feb 15, 2023)
19-52034268-G-A		not specified	Uncertain significance (May 13, 2024)
19-52034333-C-T		not specified	Uncertain significance (Nov 08, 2022)
19-52034340-G-A		not specified	Uncertain significance (Sep 20, 2023)
19-52034371-T-G		not specified	Uncertain significance (Jun 21, 2023)
19-52034397-A-T		not specified	Uncertain significance (Apr 08, 2022)
19-52034481-G-T		not specified	Uncertain significance (Feb 28, 2023)
19-52034495-T-C		not specified	Uncertain significance (Feb 05, 2024)
19-52034498-G-A		not specified	Uncertain significance (Oct 06, 2021)
19-52034511-C-T		not specified	Uncertain significance (Sep 20, 2023)
19-52034516-A-G		not specified	Uncertain significance (Oct 06, 2021)
19-52034669-C-T		not specified	Uncertain significance (May 31, 2023)
19-52034748-G-T		not specified	Uncertain significance (Dec 07, 2023)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
ZNF432	protein_coding	protein_coding	ENST00000594154	4	64360

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
3.00e-14	0.137	125494	0	252	125746	0.00100

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	-0.343	374	356	1.05	0.0000178	4366
Missense in Polyphen		143	137.31	1.0414		1694
Synonymous	0.836	105	116	0.901	0.00000558	1153
Loss of Function	0.930	24	29.4	0.815	0.00000219	327

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.000888	0.000886
Ashkenazi Jewish	0.000597	0.000595
East Asian	0.00446	0.00447
Finnish	0.000694	0.000693
European (Non-Finnish)	0.000917	0.000915
Middle Eastern	0.00446	0.00447
South Asian	0.000491	0.000490
Other	0.000653	0.000652

dbNSFP

Source: dbNSFP

• Function: FUNCTION: May be involved in transcriptional regulation.
• Pathway: Gene expression (Transcription);Generic Transcription Pathway;RNA Polymerase II Transcription (Consensus)

Intolerance Scores

• loftool: 0.838
• rvis_EVS: -0.11
• rvis_percentile_EVS: 45.49

Haploinsufficiency Scores

• hipred: N
• hipred_score: 0.146
• ghis: 0.527

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: N
• gene_indispensability_score: 0.231

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Gene ontology

• Biological process: regulation of transcription by RNA polymerase II
• Cellular component: nucleoplasm
• Molecular function: DNA-binding transcription factor activity, RNA polymerase II-specific;DNA binding;metal ion binding