ZNF445

zinc finger protein 445, the group of Zinc fingers C2H2-type|SCAN domain containing

Basic information

Region (hg38): 3:44431704-44477670

Previous symbols: [ "ZNF168" ]

Links

ENSG00000185219 ∙ NCBI:353274 ∙ OMIM:619508 ∙ HGNC:21018 ∙ Uniprot:P59923 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the ZNF445 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the ZNF445 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			49	1	1	51
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	49	1	1

Variants in ZNF445

This is a list of pathogenic ClinVar variants found in the ZNF445 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
3-44446720-C-T		not specified	Uncertain significance (Dec 13, 2023)
3-44446799-C-T		not specified	Uncertain significance (Oct 04, 2022)
3-44446814-C-T		not specified	Uncertain significance (Aug 10, 2021)
3-44446830-A-C		not specified	Uncertain significance (Dec 01, 2022)
3-44446868-G-A			Uncertain significance (Mar 17, 2023)
3-44446954-A-G		not specified	Uncertain significance (Oct 26, 2022)
3-44447074-T-C		not specified	Uncertain significance (Jan 26, 2022)
3-44447318-T-C		not specified	Uncertain significance (Nov 21, 2023)
3-44447334-G-C		not specified	Uncertain significance (Oct 03, 2022)
3-44447357-G-A		not specified	Uncertain significance (Oct 05, 2022)
3-44447363-C-T		not specified	Uncertain significance (Dec 27, 2023)
3-44447398-T-C		not specified	Likely benign (Apr 19, 2024)
3-44447419-A-T		not specified	Uncertain significance (May 27, 2022)
3-44447420-C-T		not specified	Uncertain significance (May 27, 2022)
3-44447449-G-A		not specified	Uncertain significance (Jun 29, 2023)
3-44447500-A-G		not specified	Uncertain significance (May 26, 2023)
3-44447522-C-G		not specified	Uncertain significance (Feb 23, 2023)
3-44447645-C-T		not specified	Likely benign (Jan 26, 2022)
3-44447661-C-G		not specified	Uncertain significance (May 26, 2024)
3-44447699-A-T		not specified	Uncertain significance (May 09, 2024)
3-44447834-G-T		not specified	Uncertain significance (Feb 28, 2024)
3-44447876-A-G		not specified	Uncertain significance (Jan 10, 2023)
3-44447905-C-T		not specified	Uncertain significance (Mar 14, 2023)
3-44447924-C-G		not specified	Uncertain significance (May 12, 2024)
3-44447927-A-C		not specified	Uncertain significance (Jul 14, 2021)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
ZNF445	protein_coding	protein_coding	ENST00000425708	6	37901

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
1.00	0.000295	125731	0	5	125736	0.0000199

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	1.37	462	553	0.836	0.0000307	6841
Missense in Polyphen		25	39.227	0.63732		450
Synonymous	-0.407	207	200	1.04	0.0000103	1910
Loss of Function	5.14	3	36.5	0.0822	0.00000201	439

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.0000578	0.0000578
Ashkenazi Jewish	0.00	0.00
East Asian	0.00	0.00
Finnish	0.00	0.00
European (Non-Finnish)	0.0000176	0.0000176
Middle Eastern	0.00	0.00
South Asian	0.0000327	0.0000327
Other	0.00	0.00

dbNSFP

Source: dbNSFP

• Function: FUNCTION: May be involved in transcriptional regulation.
• Pathway: Gene expression (Transcription);Generic Transcription Pathway;RNA Polymerase II Transcription (Consensus)

Recessive Scores

• pRec: 0.102

Intolerance Scores

• loftool: 0.0275
• rvis_EVS: -0.44
• rvis_percentile_EVS: 24.6

Haploinsufficiency Scores

• pHI: 0.183
• hipred: N
• hipred_score: 0.370
• ghis: 0.565

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• gene_indispensability_pred: E
• gene_indispensability_score: 0.567

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Zfp445

Gene ontology

• Biological process: regulation of transcription by RNA polymerase II
• Cellular component: nucleus
• Molecular function: DNA-binding transcription factor activity, RNA polymerase II-specific;DNA binding;metal ion binding