ZNF507

zinc finger protein 507, the group of Zinc fingers C2H2-type

Basic information

Region (hg38): 19:32345594-32387667

Links

ENSG00000168813 ∙ NCBI:22847 ∙ ∙ HGNC:23783 ∙ Uniprot:Q8TCN5 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the ZNF507 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the ZNF507 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous				3	3	6
missense			75	2		77
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	75	5	3

Variants in ZNF507

This is a list of pathogenic ClinVar variants found in the ZNF507 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
19-32352841-G-A		not specified	Uncertain significance (Oct 24, 2024)
19-32352909-A-G		not specified	Uncertain significance (Dec 12, 2024)
19-32352973-T-C		not specified	Uncertain significance (Jan 03, 2022)
19-32352978-A-G		not specified	Uncertain significance (Jan 27, 2022)
19-32353018-G-A		not specified	Uncertain significance (Oct 25, 2023)
19-32353038-C-T		not specified	Uncertain significance (Jan 08, 2024)
19-32353060-C-A		not specified	Uncertain significance (Mar 19, 2024)
19-32353064-C-G		not specified	Uncertain significance (Aug 01, 2024)
19-32353098-G-A		not specified	Uncertain significance (Aug 19, 2024)
19-32353189-G-A		not specified	Uncertain significance (May 17, 2023)
19-32353215-C-T		not specified	Uncertain significance (Oct 01, 2024)
19-32353245-G-A		not specified	Uncertain significance (Jun 28, 2023)
19-32353287-G-A		not specified	Uncertain significance (Feb 12, 2025)
19-32353291-T-C		not specified	Uncertain significance (Feb 11, 2022)
19-32353294-T-C		not specified	Uncertain significance (Sep 26, 2022)
19-32353298-G-C		not specified	Uncertain significance (Sep 22, 2023)
19-32353302-T-C		not specified	Uncertain significance (Jul 20, 2021)
19-32353309-G-A		not specified	Uncertain significance (Feb 10, 2025)
19-32353350-G-A		not specified	Uncertain significance (Oct 16, 2024)
19-32353350-G-T		not specified	Uncertain significance (Oct 14, 2023)
19-32353353-G-T		not specified	Uncertain significance (Jan 19, 2022)
19-32353410-G-T		not specified	Uncertain significance (Sep 04, 2024)
19-32353441-C-T		not specified	Uncertain significance (Apr 23, 2024)
19-32353443-A-G		not specified	Uncertain significance (Aug 12, 2022)
19-32353461-A-G		not specified	Uncertain significance (Aug 19, 2024)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
ZNF507	protein_coding	protein_coding	ENST00000311921	5	42074

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.0575	0.943	125693	0	55	125748	0.000219

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	0.0274	515	517	0.997	0.0000270	6321
Missense in Polyphen		194	223.28	0.86885		2817
Synonymous	-2.44	245	201	1.22	0.0000118	1788
Loss of Function	4.22	10	38.2	0.262	0.00000212	475

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.000210	0.000210
Ashkenazi Jewish	0.00	0.00
East Asian	0.0000544	0.0000544
Finnish	0.00103	0.00102
European (Non-Finnish)	0.000203	0.000202
Middle Eastern	0.0000544	0.0000544
South Asian	0.000139	0.000131
Other	0.00	0.00

dbNSFP

Source: dbNSFP

• Function: FUNCTION: May be involved in transcriptional regulation.

Intolerance Scores

• loftool: 0.542
• rvis_EVS: -1.15
• rvis_percentile_EVS: 6.33

Haploinsufficiency Scores

• pHI: 0.481
• hipred: Y
• hipred_score: 0.529
• ghis: 0.622

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: E
• gene_indispensability_score: 0.604

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Zfp507

Gene ontology

• Biological process: regulation of transcription by RNA polymerase II;regulation of gene expression
• Cellular component: nucleus;histone methyltransferase complex
• Molecular function: RNA polymerase II core promoter sequence-specific DNA binding;DNA-binding transcription factor activity, RNA polymerase II-specific;DNA binding;metal ion binding