ZNF567

zinc finger protein 567, the group of Zinc fingers C2H2-type

Basic information

Region (hg38): 19:36687611-36727701

Links

ENSG00000189042 ∙ NCBI:163081 ∙ ∙ HGNC:28696 ∙ Uniprot:Q8N184 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the ZNF567 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the ZNF567 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			15	1		16
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	15	1	0

Variants in ZNF567

This is a list of pathogenic ClinVar variants found in the ZNF567 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
19-36712791-G-A		not specified	Uncertain significance (Jun 23, 2023)
19-36718989-G-A		not specified	Uncertain significance (Jul 14, 2023)
19-36719152-A-G		not specified	Uncertain significance (Apr 01, 2024)
19-36719227-C-T		not specified	Uncertain significance (May 04, 2023)
19-36719332-C-T		not specified	Likely benign (Mar 16, 2022)
19-36719395-G-A		not specified	Uncertain significance (Jul 15, 2021)
19-36719679-C-T		not specified	Uncertain significance (Apr 24, 2023)
19-36719952-G-C		not specified	Uncertain significance (Dec 21, 2022)
19-36719961-A-G		not specified	Uncertain significance (Oct 17, 2023)
19-36719962-G-T		not specified	Uncertain significance (Oct 29, 2021)
19-36719965-C-T		not specified	Uncertain significance (Aug 10, 2021)
19-36720034-C-T		not specified	Uncertain significance (Dec 14, 2023)
19-36720310-G-A		not specified	Uncertain significance (May 21, 2024)
19-36720322-A-G		not specified	Uncertain significance (Dec 14, 2021)
19-36720351-C-T		not specified	Uncertain significance (Sep 16, 2021)
19-36720352-G-A		not specified	Uncertain significance (Mar 15, 2024)
19-36720508-G-A		not specified	Uncertain significance (Apr 15, 2024)
19-36720512-G-C		not specified	Uncertain significance (Feb 16, 2023)
19-36720526-A-C		not specified	Uncertain significance (Dec 07, 2023)
19-36720592-G-A		not specified	Uncertain significance (Jan 04, 2022)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
ZNF567	protein_coding	protein_coding	ENST00000585696	3	40090

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
1.08e-7	0.791	125692	0	54	125746	0.000215

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	1.67	237	321	0.738	0.0000153	4091
Missense in Polyphen		111	176.21	0.62995		2152
Synonymous	1.12	98	113	0.866	0.00000535	1093
Loss of Function	1.42	14	21.0	0.666	0.00000106	333

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.000250	0.000181
Ashkenazi Jewish	0.0000993	0.0000992
East Asian	0.000273	0.000272
Finnish	0.000231	0.000231
European (Non-Finnish)	0.000222	0.000220
Middle Eastern	0.000273	0.000272
South Asian	0.000428	0.000425
Other	0.000165	0.000163

dbNSFP

Source: dbNSFP

• Function: FUNCTION: May be involved in transcriptional regulation.
• Pathway: Gene expression (Transcription);Generic Transcription Pathway;RNA Polymerase II Transcription (Consensus)

Recessive Scores

• pRec: 0.102

Intolerance Scores

• loftool: 0.759
• rvis_EVS: -0.23
• rvis_percentile_EVS: 37.32

Haploinsufficiency Scores

• pHI: 0.649
• hipred: N
• hipred_score: 0.112
• ghis: 0.624

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: E
• gene_indispensability_score: 0.519

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Zfp300

Gene ontology

• Biological process: regulation of transcription by RNA polymerase II
• Cellular component: nucleus
• Molecular function: DNA-binding transcription factor activity, RNA polymerase II-specific;DNA binding;protein binding;metal ion binding