ZNF572

zinc finger protein 572, the group of Zinc fingers C2H2-type

Basic information

Region (hg38): 8:124973295-124979389

Links

ENSG00000180938 ∙ NCBI:137209 ∙ ∙ HGNC:26758 ∙ Uniprot:Q7Z3I7 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the ZNF572 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the ZNF572 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			44	2		46
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	44	2	0

Variants in ZNF572

This is a list of pathogenic ClinVar variants found in the ZNF572 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
8-124975665-G-A		not specified	Uncertain significance (May 15, 2023)
8-124975684-T-G		not specified	Uncertain significance (Jan 24, 2023)
8-124975690-A-G		not specified	Uncertain significance (Apr 09, 2024)
8-124976408-T-G		not specified	Uncertain significance (Jan 27, 2025)
8-124976489-C-T		not specified	Uncertain significance (Jul 26, 2022)
8-124976516-A-G		not specified	Uncertain significance (Feb 27, 2024)
8-124976524-T-C		not specified	Uncertain significance (Feb 16, 2023)
8-124976650-G-A		not specified	Uncertain significance (Jan 19, 2025)
8-124976696-A-G		not specified	Uncertain significance (Feb 23, 2023)
8-124976710-C-T		not specified	Uncertain significance (Nov 30, 2021)
8-124976765-C-G		not specified	Likely benign (Oct 06, 2023)
8-124976781-C-G		not specified	Uncertain significance (Oct 04, 2024)
8-124976786-C-T		not specified	Uncertain significance (Jun 16, 2023)
8-124976828-C-A		not specified	Uncertain significance (Jun 18, 2024)
8-124976847-T-G		not specified	Uncertain significance (Oct 19, 2024)
8-124976873-A-G		not specified	Uncertain significance (Dec 14, 2022)
8-124976898-C-A		not specified	Uncertain significance (Jan 26, 2023)
8-124976917-A-G		not specified	Uncertain significance (Dec 02, 2024)
8-124976945-G-A		not specified	Uncertain significance (Dec 01, 2022)
8-124977062-C-T		not specified	Uncertain significance (Feb 16, 2023)
8-124977142-C-T		not specified	Uncertain significance (Jun 29, 2023)
8-124977185-A-T		not specified	Uncertain significance (Sep 08, 2024)
8-124977284-G-A		not specified	Uncertain significance (Apr 25, 2022)
8-124977286-A-C		not specified	Uncertain significance (Feb 24, 2022)
8-124977316-C-G		not specified	Uncertain significance (Jan 19, 2025)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
ZNF572	protein_coding	protein_coding	ENST00000319286	2	6092

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.0130	0.981	125708	0	39	125747	0.000155

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	0.322	264	279	0.946	0.0000136	3581
Missense in Polyphen		93	103.88	0.89524		1305
Synonymous	0.0420	93	93.5	0.994	0.00000463	879
Loss of Function	2.39	6	16.4	0.365	6.94e-7	258

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.000717	0.000716
Ashkenazi Jewish	0.00	0.00
East Asian	0.0000544	0.0000544
Finnish	0.00	0.00
European (Non-Finnish)	0.000167	0.000167
Middle Eastern	0.0000544	0.0000544
South Asian	0.0000327	0.0000327
Other	0.00	0.00

dbNSFP

Source: dbNSFP

• Function: FUNCTION: May be involved in transcriptional regulation. {ECO:0000250}.

Intolerance Scores

• loftool: 0.597
• rvis_EVS: 0.76
• rvis_percentile_EVS: 86.75

Haploinsufficiency Scores

• pHI: 0.163
• hipred: N
• hipred_score: 0.112
• ghis: 0.438

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: N
• gene_indispensability_score: 0.297

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Gene ontology

• Biological process: positive regulation of transcription by RNA polymerase II
• Cellular component: nucleus
• Molecular function: DNA-binding transcription factor activity, RNA polymerase II-specific;DNA binding;protein binding;metal ion binding