ZNF576

zinc finger protein 576, the group of Zinc fingers C2H2-type

Basic information

Region (hg38): 19:43596392-43601157

Links

ENSG00000124444 ∙ NCBI:79177 ∙ ∙ HGNC:28357 ∙ Uniprot:Q9H609 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the ZNF576 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the ZNF576 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			9			9
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	9	0	0

Variants in ZNF576

This is a list of pathogenic ClinVar variants found in the ZNF576 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
19-43597119-C-A		not specified	Uncertain significance (Mar 30, 2024)
19-43597140-A-C		not specified	Uncertain significance (May 06, 2022)
19-43597148-G-T		not specified	Uncertain significance (May 18, 2022)
19-43598840-G-A		not specified	Uncertain significance (Apr 01, 2024)
19-43599017-G-A		not specified	Uncertain significance (Jun 16, 2023)
19-43599058-A-G		not specified	Uncertain significance (Mar 01, 2024)
19-43599068-C-T		not specified	Uncertain significance (Aug 17, 2021)
19-43599118-G-A		not specified	Uncertain significance (May 08, 2024)
19-43599144-G-T		not specified	Uncertain significance (Oct 03, 2022)
19-43599154-C-T		not specified	Uncertain significance (Feb 22, 2023)
19-43599175-G-A		not specified	Uncertain significance (Aug 17, 2021)
19-43599236-G-A		not specified	Uncertain significance (Nov 09, 2022)
19-43599244-C-T		not specified	Uncertain significance (Jun 03, 2024)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
ZNF576	protein_coding	protein_coding	ENST00000336564	2	4766

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.00163	0.475	125729	0	19	125748	0.0000756

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	1.15	81	116	0.700	0.00000751	1115
Missense in Polyphen		27	41.689	0.64765		423
Synonymous	1.32	33	44.1	0.748	0.00000276	347
Loss of Function	0.00943	4	4.02	0.995	1.70e-7	49

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.0000615	0.0000615
Ashkenazi Jewish	0.00	0.00
East Asian	0.000217	0.000217
Finnish	0.00	0.00
European (Non-Finnish)	0.000123	0.000123
Middle Eastern	0.000217	0.000217
South Asian	0.00	0.00
Other	0.00	0.00

dbNSFP

Source: dbNSFP

• Function: FUNCTION: May be involved in transcriptional regulation.

Intolerance Scores

• loftool: 0.551
• rvis_EVS: 0.28
• rvis_percentile_EVS: 71.08

Haploinsufficiency Scores

• pHI: 0.113
• hipred: N
• hipred_score: 0.180
• ghis: 0.499

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: E
• gene_indispensability_score: 0.813

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Gene ontology

• Biological process: regulation of transcription by RNA polymerase II
• Cellular component: nucleus
• Molecular function: DNA-binding transcription factor activity, RNA polymerase II-specific;DNA binding;protein binding;metal ion binding