ZNF585A

zinc finger protein 585A, the group of Zinc fingers C2H2-type

Basic information

Region (hg38): 19:37106734-37172741

Links

ENSG00000196967 ∙ NCBI:199704 ∙ ∙ HGNC:26305 ∙ Uniprot:Q6P3V2 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the ZNF585A gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the ZNF585A gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous				1		1
missense			32	1		33
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	32	2	0

Variants in ZNF585A

This is a list of pathogenic ClinVar variants found in the ZNF585A region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
19-37127229-G-A		not specified	Uncertain significance (Mar 16, 2024)
19-37127241-T-C		not specified	Uncertain significance (Jun 16, 2024)
19-37127278-T-C		not specified	Uncertain significance (Dec 08, 2023)
19-37127353-A-G		Breast ductal adenocarcinoma	Uncertain significance (Jul 20, 2015)
19-37127399-G-T		not specified	Uncertain significance (Mar 07, 2024)
19-37127512-A-G		not specified	Uncertain significance (May 03, 2023)
19-37127598-G-A		not specified	Uncertain significance (Jan 09, 2024)
19-37127754-G-C		not specified	Uncertain significance (Jun 09, 2022)
19-37127812-C-T		not specified	Uncertain significance (Nov 12, 2021)
19-37127822-G-C		not specified	Uncertain significance (May 25, 2022)
19-37127885-G-C		not specified	Uncertain significance (Nov 08, 2022)
19-37127898-G-A		not specified	Uncertain significance (Mar 27, 2023)
19-37127967-C-A		not specified	Uncertain significance (Jan 20, 2023)
19-37128067-G-C		not specified	Uncertain significance (May 15, 2024)
19-37128363-C-T		not specified	Uncertain significance (Oct 06, 2021)
19-37128391-G-A		not specified	Uncertain significance (Aug 12, 2021)
19-37128613-C-T		not specified	Uncertain significance (Mar 02, 2023)
19-37128616-G-A		not specified	Uncertain significance (Sep 22, 2023)
19-37128632-A-G		not specified	Uncertain significance (Dec 14, 2021)
19-37128661-A-C		not specified	Uncertain significance (Dec 14, 2021)
19-37128688-A-G		not specified	Uncertain significance (Sep 27, 2022)
19-37128708-C-G		not specified	Uncertain significance (Mar 18, 2024)
19-37128767-T-A			Uncertain significance (Jan 27, 2017)
19-37128773-G-C		not specified	Uncertain significance (Oct 20, 2023)
19-37128885-C-T		not specified	Uncertain significance (Jun 06, 2023)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
ZNF585A	protein_coding	protein_coding	ENST00000292841	3	66008

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.0000278	0.997	125719	1	27	125747	0.000111

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	0.821	332	377	0.881	0.0000186	4743
Missense in Polyphen		144	183.97	0.78272		2398
Synonymous	-1.37	156	136	1.15	0.00000735	1263
Loss of Function	2.60	12	26.4	0.454	0.00000137	370

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.000330	0.000326
Ashkenazi Jewish	0.00	0.00
East Asian	0.0000544	0.0000544
Finnish	0.0000462	0.0000462
European (Non-Finnish)	0.000106	0.000105
Middle Eastern	0.0000544	0.0000544
South Asian	0.000196	0.000163
Other	0.00	0.00

dbNSFP

Source: dbNSFP

• Function: FUNCTION: May be involved in transcriptional regulation.
• Pathway: Gene expression (Transcription);Generic Transcription Pathway;RNA Polymerase II Transcription (Consensus)

Intolerance Scores

• loftool: 0.627
• rvis_EVS: 0.82
• rvis_percentile_EVS: 88.04

Haploinsufficiency Scores

• pHI: 0.282
• hipred: N
• hipred_score: 0.380
• ghis: 0.491

Essentials

• essential_gene_CRISPR: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: N
• gene_indispensability_score: 0.132

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Zfp27

Gene ontology

• Biological process: regulation of transcription by RNA polymerase II
• Cellular component: nucleus
• Molecular function: DNA-binding transcription factor activity, RNA polymerase II-specific;DNA binding;metal ion binding