ZNF606

zinc finger protein 606, the group of Zinc fingers C2H2-type

Basic information

Region (hg38): 19:57977075-58003349

Previous symbols: [ "ZNF328" ]

Links

ENSG00000166704 ∙ NCBI:80095 ∙ OMIM:613905 ∙ HGNC:25879 ∙ Uniprot:Q8WXB4 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

• neuromyelitis optica (Limited), mode of inheritance: AD

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the ZNF606 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the ZNF606 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous				2	3	5
missense			33			33
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	33	2	3

Variants in ZNF606

This is a list of pathogenic ClinVar variants found in the ZNF606 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
19-57978331-C-G		not specified	Uncertain significance (Apr 09, 2024)
19-57978392-C-T		not specified	Uncertain significance (Jul 12, 2023)
19-57978422-A-G		not specified	Uncertain significance (Feb 23, 2023)
19-57978426-T-C		not specified	Uncertain significance (Jan 04, 2022)
19-57978528-T-G		not specified	Uncertain significance (Sep 27, 2022)
19-57978581-C-G			Uncertain significance (-)
19-57978584-C-T		not specified	Uncertain significance (Apr 24, 2024)
19-57978585-G-A		not specified	Uncertain significance (May 24, 2024)
19-57978668-C-T		not specified	Uncertain significance (Mar 11, 2024)
19-57978701-G-A		not specified	Uncertain significance (Nov 08, 2021)
19-57978815-T-C		not specified	Uncertain significance (Apr 05, 2023)
19-57978907-C-T			Likely benign (Apr 17, 2018)
19-57978924-G-A		not specified	Uncertain significance (Nov 30, 2022)
19-57979097-A-G		not specified	Uncertain significance (Jun 17, 2024)
19-57979229-T-C		not specified	Uncertain significance (Dec 08, 2023)
19-57979327-A-T			Benign (May 21, 2018)
19-57979337-C-T		not specified	Uncertain significance (Jan 25, 2024)
19-57979389-C-G		not specified	Uncertain significance (Feb 28, 2024)
19-57979425-T-G		not specified	Uncertain significance (Jan 10, 2023)
19-57979427-T-C		not specified	Uncertain significance (Jan 03, 2024)
19-57979446-T-G		not specified	Uncertain significance (Jan 04, 2024)
19-57979560-A-G		not specified	Uncertain significance (Jan 10, 2023)
19-57979589-T-G		not specified	Uncertain significance (Nov 17, 2022)
19-57979629-C-T		not specified	Uncertain significance (Jan 03, 2022)
19-57979671-T-G			Benign (Apr 17, 2018)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
ZNF606	protein_coding	protein_coding	ENST00000341164	6	26297

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.418	0.582	125738	0	10	125748	0.0000398

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	1.19	352	421	0.836	0.0000202	5319
Missense in Polyphen		144	215.46	0.66834		2742
Synonymous	-1.13	161	144	1.12	0.00000713	1360
Loss of Function	4.05	7	31.5	0.222	0.00000133	434

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.000119	0.000119
Ashkenazi Jewish	0.00	0.00
East Asian	0.0000544	0.0000544
Finnish	0.00	0.00
European (Non-Finnish)	0.0000265	0.0000264
Middle Eastern	0.0000544	0.0000544
South Asian	0.0000680	0.0000653
Other	0.00	0.00

dbNSFP

Source: dbNSFP

• Function: FUNCTION: May act as a transcriptional repressor. {ECO:0000269|PubMed:15964554}.
• Pathway: Gene expression (Transcription);Generic Transcription Pathway;RNA Polymerase II Transcription (Consensus)

Recessive Scores

• pRec: 0.0868

Intolerance Scores

• loftool: 0.615
• rvis_EVS: -0.82
• rvis_percentile_EVS: 11.94

Haploinsufficiency Scores

• pHI: 0.212
• hipred: N
• hipred_score: 0.346
• ghis: 0.581

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: E
• gene_indispensability_score: 0.616

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Zfp606

Gene ontology

• Biological process: regulation of transcription by RNA polymerase II
• Cellular component: nucleus
• Molecular function: DNA-binding transcription factor activity, RNA polymerase II-specific;DNA binding;metal ion binding