ZNF611

zinc finger protein 611, the group of Zinc fingers C2H2-type

Basic information

Region (hg38): 19:52702813-52735073

Links

ENSG00000213020 ∙ NCBI:81856 ∙ ∙ HGNC:28766 ∙ Uniprot:Q8N823 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the ZNF611 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the ZNF611 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			70	5		75
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	70	5	0

Variants in ZNF611

This is a list of pathogenic ClinVar variants found in the ZNF611 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
19-52704941-G-A		not specified	Uncertain significance (Oct 06, 2024)
19-52704972-G-A		not specified	Uncertain significance (Jun 03, 2022)
19-52705004-C-T		not specified	Uncertain significance (Jan 27, 2022)
19-52705026-G-A		not specified	Uncertain significance (Jun 29, 2023)
19-52705038-T-G		not specified	Uncertain significance (Nov 27, 2024)
19-52705100-C-A		not specified	Uncertain significance (Aug 14, 2024)
19-52705133-C-T		not specified	Uncertain significance (Oct 25, 2024)
19-52705134-G-A		not specified	Uncertain significance (Aug 23, 2021)
19-52705151-G-A		not specified	Uncertain significance (Dec 01, 2022)
19-52705160-C-T		not specified	Uncertain significance (Dec 13, 2023)
19-52705161-G-A		not specified	Uncertain significance (Dec 19, 2022)
19-52705186-C-A		not specified	Uncertain significance (Aug 16, 2022)
19-52705241-C-T		not specified	Uncertain significance (Nov 10, 2024)
19-52705242-G-A		not specified	Uncertain significance (Mar 15, 2024)
19-52705353-A-C		not specified	Uncertain significance (Sep 13, 2023)
19-52705418-G-C		not specified	Uncertain significance (Jan 23, 2024)
19-52705467-T-C		not specified	Uncertain significance (Jan 18, 2022)
19-52705493-C-T		not specified	Uncertain significance (Dec 12, 2023)
19-52705560-T-C		not specified	Uncertain significance (Oct 17, 2024)
19-52705586-G-T		not specified	Uncertain significance (Mar 25, 2024)
19-52705617-T-C		not specified	Uncertain significance (Feb 27, 2024)
19-52705629-C-T		not specified	Uncertain significance (May 30, 2023)
19-52705700-T-G		not specified	Uncertain significance (Sep 22, 2023)
19-52705731-C-G		not specified	Uncertain significance (Aug 14, 2024)
19-52705811-C-T		not specified	Uncertain significance (Sep 16, 2021)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
ZNF611	protein_coding	protein_coding	ENST00000543227	3	32261

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.0672	0.747	125673	0	3	125676	0.0000119

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	-1.51	442	361	1.22	0.0000187	4695
Missense in Polyphen		170	154.6	1.0996		2171
Synonymous	-1.33	141	122	1.15	0.00000572	1234
Loss of Function	0.901	2	3.93	0.509	1.66e-7	49

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.000123	0.000123
Ashkenazi Jewish	0.00	0.00
East Asian	0.0000544	0.0000544
Finnish	0.00	0.00
European (Non-Finnish)	0.00	0.00
Middle Eastern	0.0000544	0.0000544
South Asian	0.00	0.00
Other	0.00	0.00

dbNSFP

Source: dbNSFP

• Function: FUNCTION: May be involved in transcriptional regulation.
• Pathway: Gene expression (Transcription);Generic Transcription Pathway;RNA Polymerase II Transcription (Consensus)

Intolerance Scores

• loftool: 0.992
• rvis_EVS: 0.81
• rvis_percentile_EVS: 87.73

Haploinsufficiency Scores

• pHI: 0.147
• hipred: N
• hipred_score: 0.112
• ghis: 0.543

Essentials

• essential_gene_CRISPR: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: N
• gene_indispensability_score: 0.165

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Gene ontology

• Biological process: regulation of transcription by RNA polymerase II
• Cellular component: nucleus
• Molecular function: DNA-binding transcription factor activity, RNA polymerase II-specific;DNA binding;metal ion binding