ZNF615

zinc finger protein 615, the group of Zinc fingers C2H2-type

Basic information

Region (hg38): 19:51991332-52008230

Links

ENSG00000197619 ∙ NCBI:284370 ∙ ∙ HGNC:24740 ∙ Uniprot:Q8N8J6 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the ZNF615 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the ZNF615 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			31			31
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	31	0	0

Variants in ZNF615

This is a list of pathogenic ClinVar variants found in the ZNF615 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
19-51992900-G-A		not specified	Uncertain significance (Jun 03, 2024)
19-51992921-G-A		not specified	Uncertain significance (Mar 29, 2022)
19-51992974-T-C		not specified	Uncertain significance (Jan 23, 2023)
19-51993010-A-G		not specified	Uncertain significance (Sep 02, 2024)
19-51993061-C-T		not specified	Uncertain significance (Sep 10, 2024)
19-51993067-T-C		not specified	Uncertain significance (Nov 15, 2024)
19-51993091-A-G		not specified	Uncertain significance (Aug 14, 2024)
19-51993096-G-T		not specified	Uncertain significance (Sep 06, 2022)
19-51993118-G-A		not specified	Uncertain significance (Sep 10, 2024)
19-51993145-C-T		not specified	Uncertain significance (Dec 30, 2023)
19-51993151-T-A		not specified	Uncertain significance (Jun 28, 2023)
19-51993196-T-A		not specified	Uncertain significance (May 31, 2023)
19-51993227-T-G		not specified	Uncertain significance (Mar 25, 2022)
19-51993397-C-T		not specified	Uncertain significance (Nov 25, 2024)
19-51993400-C-T		not specified	Uncertain significance (Aug 12, 2024)
19-51993401-G-A		not specified	Uncertain significance (May 24, 2024)
19-51993481-C-T		not specified	Uncertain significance (Apr 15, 2024)
19-51993499-C-T		not specified	Uncertain significance (Jan 02, 2024)
19-51993542-A-G		not specified	Uncertain significance (Dec 06, 2021)
19-51993583-C-T		not specified	Uncertain significance (Jul 17, 2023)
19-51993643-T-C		not specified	Uncertain significance (May 23, 2023)
19-51993649-C-T		not specified	Uncertain significance (Jan 23, 2024)
19-51993698-C-T		not specified	Uncertain significance (Mar 25, 2024)
19-51993701-T-G		not specified	Uncertain significance (Nov 19, 2022)
19-51993733-C-T		not specified	Uncertain significance (Apr 28, 2022)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
ZNF615	protein_coding	protein_coding	ENST00000594083	5	16899

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
8.38e-12	0.678	125618	0	130	125748	0.000517

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	-0.129	396	389	1.02	0.0000199	4959
Missense in Polyphen		168	156.65	1.0725		2005
Synonymous	0.243	128	132	0.973	0.00000649	1327
Loss of Function	1.55	22	31.4	0.701	0.00000239	358

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.00162	0.00162
Ashkenazi Jewish	0.00109	0.00109
East Asian	0.000163	0.000163
Finnish	0.0000924	0.0000924
European (Non-Finnish)	0.000528	0.000528
Middle Eastern	0.000163	0.000163
South Asian	0.000327	0.000327
Other	0.000978	0.000978

dbNSFP

Source: dbNSFP

• Function: FUNCTION: May be involved in transcriptional regulation.
• Pathway: Gene expression (Transcription);Generic Transcription Pathway;RNA Polymerase II Transcription (Consensus)

Intolerance Scores

• loftool: 0.953
• rvis_EVS: 0.49
• rvis_percentile_EVS: 79.55

Haploinsufficiency Scores

• pHI: 0.170
• hipred: N
• hipred_score: 0.326
• ghis: 0.514

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: N
• gene_indispensability_score: 0.113

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	High
Cancer	Medium	Medium	Medium

Gene ontology

• Biological process: regulation of transcription by RNA polymerase II
• Cellular component: nucleus
• Molecular function: DNA-binding transcription factor activity, RNA polymerase II-specific;DNA binding;metal ion binding