ZNF628

zinc finger protein 628, the group of Zinc fingers C2H2-type

Basic information

Region (hg38): 19:55476617-55484487

Links

ENSG00000197483 ∙ NCBI:89887 ∙ OMIM:610671 ∙ HGNC:28054 ∙ Uniprot:Q5EBL2 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the ZNF628 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the ZNF628 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			22	1		23
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	22	1	0

Variants in ZNF628

This is a list of pathogenic ClinVar variants found in the ZNF628 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
19-55481222-C-T		not specified	Uncertain significance (Jan 31, 2022)
19-55481224-G-T		not specified	Uncertain significance (Sep 20, 2023)
19-55481276-C-T		not specified	Uncertain significance (May 23, 2023)
19-55481279-C-T		not specified	Uncertain significance (Dec 17, 2023)
19-55481380-C-T		not specified	Uncertain significance (Dec 16, 2023)
19-55481543-T-C		not specified	Likely benign (Jan 30, 2024)
19-55481657-A-G		not specified	Uncertain significance (Jun 22, 2021)
19-55481872-G-C		not specified	Uncertain significance (Jul 13, 2021)
19-55481903-C-T		not specified	Uncertain significance (Mar 02, 2023)
19-55481938-G-A		not specified	Uncertain significance (Sep 06, 2022)
19-55481993-C-G		not specified	Uncertain significance (Nov 22, 2021)
19-55482143-C-G		not specified	Uncertain significance (Jun 02, 2024)
19-55482315-C-G		not specified	Uncertain significance (Dec 26, 2023)
19-55482335-C-G		not specified	Uncertain significance (Oct 26, 2022)
19-55482424-G-C		not specified	Uncertain significance (Aug 13, 2021)
19-55482530-C-T		not specified	Uncertain significance (May 24, 2024)
19-55482560-G-T		not specified	Uncertain significance (Apr 09, 2024)
19-55482830-C-T		not specified	Uncertain significance (Jan 03, 2024)
19-55482971-C-T		not specified	Uncertain significance (Dec 04, 2023)
19-55483127-C-T		not specified	Uncertain significance (Dec 06, 2023)
19-55483156-G-A		not specified	Uncertain significance (Aug 12, 2021)
19-55483229-A-C		not specified	Uncertain significance (Nov 15, 2021)
19-55483348-C-A		not specified	Uncertain significance (May 23, 2023)
19-55484087-C-T		not specified	Uncertain significance (Jan 22, 2024)
19-55484128-A-C		not specified	Uncertain significance (Apr 20, 2024)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
ZNF628	protein_coding	protein_coding	ENST00000598519	2	8156

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.913	0.0873	125529	0	11	125540	0.0000438

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	1.21	504	587	0.859	0.0000420	6471
Missense in Polyphen		139	231.25	0.60108		2434
Synonymous	-2.27	341	292	1.17	0.0000239	2347
Loss of Function	3.94	4	25.5	0.157	0.00000133	260

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.000242	0.000241
Ashkenazi Jewish	0.00	0.00
East Asian	0.000111	0.000109
Finnish	0.00	0.00
European (Non-Finnish)	0.0000266	0.0000264
Middle Eastern	0.000111	0.000109
South Asian	0.00	0.00
Other	0.00	0.00

dbNSFP

Source: dbNSFP

• Function: FUNCTION: Transcription activator. Binds DNA on GT-box consensus sequence 5'-TTGGTT-3' (By similarity). {ECO:0000250}.

Haploinsufficiency Scores

• pHI: 0.0811
• hipred: Y
• hipred_score: 0.572
• ghis: 0.530

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• gene_indispensability_pred: N
• gene_indispensability_score: 0.327

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Zfp628

Gene ontology

• Biological process: regulation of transcription by RNA polymerase II
• Cellular component: nucleus
• Molecular function: DNA-binding transcription factor activity, RNA polymerase II-specific;DNA binding;metal ion binding