ZNF655

zinc finger protein 655, the group of Zinc fingers C2H2-type

Basic information

Region (hg38): 7:99558405-99576453

Links

ENSG00000197343 ∙ NCBI:79027 ∙ OMIM:617891 ∙ HGNC:30899 ∙ Uniprot:Q8N720 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the ZNF655 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the ZNF655 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous				2		2
missense			22	1	1	24
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding			1			1
Total	0	0	23	3	1

Variants in ZNF655

This is a list of pathogenic ClinVar variants found in the ZNF655 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
7-99560572-C-A		not specified	Uncertain significance (Jan 31, 2023)
7-99560671-G-A		not specified	Uncertain significance (Apr 25, 2022)
7-99571720-C-G		not specified	Uncertain significance (May 27, 2022)
7-99572296-C-T		not specified	Uncertain significance (Jan 22, 2024)
7-99572340-C-T		not specified	Uncertain significance (Jul 06, 2021)
7-99572343-G-A		not specified	Uncertain significance (Nov 18, 2022)
7-99572509-C-T		not specified	Uncertain significance (Aug 02, 2021)
7-99572576-C-T			Likely benign (May 01, 2023)
7-99572584-A-G		not specified	Likely benign (Aug 05, 2023)
7-99572645-T-G		not specified	Uncertain significance (Feb 11, 2022)
7-99572737-A-T		not specified	Uncertain significance (Nov 06, 2023)
7-99572800-A-G		not specified	Uncertain significance (Feb 13, 2023)
7-99572868-A-C		not specified	Uncertain significance (Jan 16, 2024)
7-99572906-A-G			Likely benign (May 01, 2023)
7-99572944-C-A		not specified	Uncertain significance (Mar 28, 2023)
7-99573129-C-T		not specified	Uncertain significance (Feb 23, 2023)
7-99573135-T-C		not specified	Uncertain significance (Nov 17, 2023)
7-99573166-A-G		not specified	Uncertain significance (Mar 01, 2023)
7-99573325-A-G		not specified	Uncertain significance (Dec 31, 2023)
7-99573330-C-G		not specified	Uncertain significance (Mar 31, 2023)
7-99573340-A-G		not specified	Uncertain significance (Jun 30, 2023)
7-99573364-A-C		not specified	Uncertain significance (Dec 15, 2023)
7-99573436-G-A		not specified	Uncertain significance (Feb 13, 2024)
7-99573470-A-T		not specified	Uncertain significance (Oct 12, 2021)
7-99573504-T-G			Benign (Oct 16, 2018)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
ZNF655	protein_coding	protein_coding	ENST00000424881	3	18048

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.154	0.845	125699	0	48	125747	0.000191

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	0.661	235	265	0.886	0.0000121	3537
Missense in Polyphen		5	9.8197	0.50918		117
Synonymous	1.27	81	96.9	0.836	0.00000485	881
Loss of Function	2.98	5	19.0	0.262	8.60e-7	282

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.000145	0.000145
Ashkenazi Jewish	0.00	0.00
East Asian	0.000272	0.000272
Finnish	0.000139	0.000139
European (Non-Finnish)	0.000282	0.000281
Middle Eastern	0.000272	0.000272
South Asian	0.000102	0.0000980
Other	0.00	0.00

dbNSFP

Source: dbNSFP

• Function: FUNCTION: May be involved in transcriptional regulation.
• Pathway: Retinoblastoma (RB) in Cancer;Gene expression (Transcription);Generic Transcription Pathway;RNA Polymerase II Transcription (Consensus)

Recessive Scores

• pRec: 0.112

Intolerance Scores

• loftool: 0.368
• rvis_EVS: 1
• rvis_percentile_EVS: 90.72

Haploinsufficiency Scores

• pHI: 0.111
• hipred: N
• hipred_score: 0.154
• ghis: 0.529

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: E
• gene_indispensability_score: 0.988

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Zfp655

Gene ontology

• Biological process: regulation of transcription by RNA polymerase II;negative regulation of G1/S transition of mitotic cell cycle
• Cellular component: nucleus;nucleolus;cytoplasm
• Molecular function: DNA-binding transcription factor activity, RNA polymerase II-specific;molecular_function;DNA binding;protein binding;metal ion binding