ZNF665

zinc finger protein 665, the group of Zinc fingers C2H2-type

Basic information

Region (hg38): 19:53159212-53193386

Links

ENSG00000197497 ∙ NCBI:79788 ∙ ∙ HGNC:25885 ∙ Uniprot:Q9H7R5 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the ZNF665 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the ZNF665 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous				7		7
missense			48			48
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	48	7	0

Variants in ZNF665

This is a list of pathogenic ClinVar variants found in the ZNF665 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
19-53164459-A-T		not specified	Uncertain significance (Aug 08, 2023)
19-53164472-C-T		not specified	Uncertain significance (May 31, 2023)
19-53164476-G-A		not specified	Uncertain significance (Aug 13, 2021)
19-53164548-G-A		not specified	Uncertain significance (Nov 21, 2022)
19-53164571-G-C		not specified	Uncertain significance (Sep 29, 2023)
19-53164576-A-T			Likely benign (Mar 01, 2024)
19-53164578-G-A		not specified	Uncertain significance (Dec 27, 2022)
19-53164579-A-C			Likely benign (Mar 01, 2024)
19-53164585-G-A			Likely benign (Mar 01, 2024)
19-53164593-T-C		not specified	Uncertain significance (Jun 24, 2022)
19-53164594-C-G			Likely benign (Mar 01, 2024)
19-53164674-C-T		not specified	Uncertain significance (Jun 05, 2023)
19-53164682-C-T		not specified	Uncertain significance (Jul 06, 2021)
19-53164686-C-T		not specified	Uncertain significance (Jan 02, 2024)
19-53164758-C-G		not specified	Uncertain significance (Feb 28, 2024)
19-53164764-C-T		not specified	Uncertain significance (May 13, 2024)
19-53164781-T-C		not specified	Uncertain significance (Jan 19, 2024)
19-53164826-G-A		not specified	Uncertain significance (May 26, 2023)
19-53164872-T-C		not specified	Uncertain significance (Jun 29, 2022)
19-53164913-T-A		not specified	Uncertain significance (Feb 13, 2024)
19-53164934-C-T		not specified	Uncertain significance (Jan 29, 2024)
19-53165027-C-T		not specified	Uncertain significance (Jan 26, 2022)
19-53165096-T-G		not specified	Uncertain significance (Dec 16, 2023)
19-53165107-A-G			Likely benign (Mar 01, 2024)
19-53165111-C-T		not specified	Uncertain significance (Jan 17, 2024)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
ZNF665	protein_coding	protein_coding	ENST00000396424	3	34174

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.00863	0.590	125509	0	5	125514	0.0000199

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	-0.763	396	355	1.11	0.0000178	4493
Missense in Polyphen		119	111.31	1.069		1545
Synonymous	-0.358	128	123	1.04	0.00000611	1204
Loss of Function	0.240	3	3.48	0.861	1.48e-7	38

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.0000588	0.0000588
Ashkenazi Jewish	0.00	0.00
East Asian	0.00	0.00
Finnish	0.00	0.00
European (Non-Finnish)	0.0000270	0.0000264
Middle Eastern	0.00	0.00
South Asian	0.00	0.00
Other	0.00	0.00

dbNSFP

Source: dbNSFP

• Function: FUNCTION: May be involved in transcriptional regulation.
• Pathway: Gene expression (Transcription);Generic Transcription Pathway;RNA Polymerase II Transcription (Consensus)

Intolerance Scores

• loftool: 0.828
• rvis_EVS: 0.96
• rvis_percentile_EVS: 90.17

Haploinsufficiency Scores

• pHI: 0.176
• hipred: N
• hipred_score: 0.146
• ghis: 0.477

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: N
• gene_indispensability_score: 0.0239

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Zfp160

Gene ontology

• Biological process: regulation of transcription by RNA polymerase II
• Cellular component: nucleus
• Molecular function: DNA-binding transcription factor activity, RNA polymerase II-specific;DNA binding;metal ion binding