ZNF691

zinc finger protein 691, the group of Zinc fingers C2H2-type

Basic information

Region (hg38): 1:42846572-42852477

Links

ENSG00000164011 ∙ NCBI:51058 ∙ ∙ HGNC:28028 ∙ Uniprot:Q5VV52 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the ZNF691 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the ZNF691 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			22	1		23
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	22	1	0

Variants in ZNF691

This is a list of pathogenic ClinVar variants found in the ZNF691 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
1-42849669-G-C		not specified	Uncertain significance (Feb 26, 2024)
1-42849677-A-G		not specified	Likely benign (Jul 25, 2023)
1-42849701-T-C		not specified	Uncertain significance (Aug 14, 2023)
1-42849714-C-G		not specified	Uncertain significance (Aug 23, 2021)
1-42851004-G-A		not specified	Uncertain significance (May 30, 2024)
1-42851008-G-A		not specified	Uncertain significance (Jan 10, 2023)
1-42851017-G-A		not specified	Uncertain significance (Sep 17, 2021)
1-42851046-G-T		not specified	Uncertain significance (Apr 25, 2022)
1-42851062-C-A		not specified	Uncertain significance (Sep 06, 2022)
1-42851125-A-T		not specified	Uncertain significance (Jan 05, 2022)
1-42851148-C-T		not specified	Uncertain significance (Feb 05, 2024)
1-42851155-G-A		not specified	Uncertain significance (Jun 04, 2024)
1-42851176-C-T		not specified	Uncertain significance (Dec 21, 2022)
1-42851179-A-C		not specified	Uncertain significance (Mar 30, 2024)
1-42851182-C-T		not specified	Uncertain significance (May 14, 2024)
1-42851268-C-T		not specified	Uncertain significance (Apr 23, 2024)
1-42851352-C-T		not specified	Uncertain significance (Jan 26, 2023)
1-42851406-C-T		not specified	Uncertain significance (Jan 07, 2022)
1-42851412-C-T		not specified	Uncertain significance (Nov 10, 2022)
1-42851463-C-T		not specified	Uncertain significance (Jun 03, 2022)
1-42851490-A-C		not specified	Uncertain significance (Jun 06, 2023)
1-42851623-G-A		not specified	Uncertain significance (Jul 13, 2021)
1-42851715-C-T		not specified	Uncertain significance (Nov 12, 2021)
1-42851728-G-T		not specified	Uncertain significance (Aug 13, 2021)
1-42851733-A-C		not specified	Uncertain significance (Nov 09, 2023)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
ZNF691	protein_coding	protein_coding	ENST00000397044	2	5869

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.824	0.176	125740	0	8	125748	0.0000318

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	0.528	168	188	0.892	0.0000123	2078
Missense in Polyphen		53	75.332	0.70355		816
Synonymous	0.435	67	71.7	0.935	0.00000414	605
Loss of Function	2.65	1	10.1	0.0991	4.99e-7	135

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.0000289	0.0000289
Ashkenazi Jewish	0.00	0.00
East Asian	0.0000544	0.0000544
Finnish	0.00	0.00
European (Non-Finnish)	0.0000452	0.0000439
Middle Eastern	0.0000544	0.0000544
South Asian	0.0000327	0.0000327
Other	0.00	0.00

dbNSFP

Source: dbNSFP

• Function: FUNCTION: May be involved in transcriptional regulation.
• Pathway: Gene expression (Transcription);Generic Transcription Pathway;RNA Polymerase II Transcription (Consensus)

Recessive Scores

• pRec: 0.0863

Intolerance Scores

• loftool: 0.368
• rvis_EVS: -0.45
• rvis_percentile_EVS: 24

Haploinsufficiency Scores

• pHI: 0.114
• hipred: N
• hipred_score: 0.199
• ghis: 0.588

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: N
• gene_indispensability_score: 0.195

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Zfp691

Gene ontology

• Biological process: negative regulation of transcription by RNA polymerase II;positive regulation of transcription by RNA polymerase II
• Cellular component: nucleoplasm
• Molecular function: DNA-binding transcription factor activity, RNA polymerase II-specific;DNA-binding transcription factor activity;transcription regulatory region DNA binding;metal ion binding