ZNF707

zinc finger protein 707, the group of Zinc fingers C2H2-type

Basic information

Region (hg38): 8:143684452-143713898

Links

ENSG00000181135 ∙ NCBI:286075 ∙ ∙ HGNC:27815 ∙ Uniprot:Q96C28 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the ZNF707 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the ZNF707 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			38	2		40
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding			3			3
Total	0	0	41	2	0

Variants in ZNF707

This is a list of pathogenic ClinVar variants found in the ZNF707 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
8-143690112-G-A		not specified	Uncertain significance (Apr 21, 2022)
8-143690115-A-G		not specified	Likely benign (Oct 21, 2021)
8-143690119-C-G		not specified	Uncertain significance (Oct 25, 2024)
8-143691145-A-T		not specified	Uncertain significance (Aug 28, 2024)
8-143691157-C-T		not specified	Uncertain significance (Jul 06, 2024)
8-143691158-G-A		not specified	Uncertain significance (Jan 07, 2025)
8-143691160-G-A		not specified	Uncertain significance (Dec 20, 2021)
8-143691172-G-C		not specified	Uncertain significance (Nov 13, 2024)
8-143691176-A-G		not specified	Uncertain significance (Feb 02, 2025)
8-143691632-C-T		not specified	Uncertain significance (Sep 20, 2023)
8-143691668-C-T		not specified	Uncertain significance (Apr 22, 2022)
8-143691669-G-A		not specified	Uncertain significance (Jan 03, 2025)
8-143691680-G-A		not specified	Uncertain significance (Mar 29, 2023)
8-143691687-A-G		not specified	Uncertain significance (Oct 05, 2023)
8-143691688-G-T		not specified	Uncertain significance (Jan 26, 2022)
8-143693728-A-G		not specified	Uncertain significance (Sep 03, 2024)
8-143693812-T-A		not specified	Uncertain significance (Jun 13, 2023)
8-143693845-A-T		not specified	Uncertain significance (Aug 12, 2021)
8-143693881-G-A		not specified	Uncertain significance (Jul 20, 2022)
8-143693890-G-A		not specified	Likely benign (Apr 20, 2023)
8-143693925-G-A		not specified	Uncertain significance (Sep 17, 2021)
8-143693958-G-C		not specified	Uncertain significance (Oct 20, 2024)
8-143693989-T-A		not specified	Uncertain significance (Dec 02, 2022)
8-143694046-A-G		not specified	Uncertain significance (Jan 09, 2025)
8-143694073-A-C		not specified	Uncertain significance (Jan 10, 2025)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
ZNF707	protein_coding	protein_coding	ENST00000532205	4	29447

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.00131	0.870	124626	0	47	124673	0.000189

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	0.677	210	239	0.877	0.0000170	2417
Missense in Polyphen		52	63.332	0.82107		672
Synonymous	-0.0161	98	97.8	1.00	0.00000714	709
Loss of Function	1.32	6	10.6	0.564	4.55e-7	123

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.000402	0.000376
Ashkenazi Jewish	0.00	0.00
East Asian	0.00	0.00
Finnish	0.0000519	0.0000464
European (Non-Finnish)	0.000354	0.000320
Middle Eastern	0.00	0.00
South Asian	0.0000334	0.0000327
Other	0.000340	0.000330

dbNSFP

Source: dbNSFP

• Function: FUNCTION: May be involved in transcriptional regulation.
• Pathway: Gene expression (Transcription);Generic Transcription Pathway;RNA Polymerase II Transcription (Consensus)

Recessive Scores

• pRec: 0.103

Intolerance Scores

• loftool: 0.761
• rvis_EVS: 0.26
• rvis_percentile_EVS: 70.52

Haploinsufficiency Scores

• pHI: 0.171
• hipred: N
• hipred_score: 0.180
• ghis: 0.522

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: E
• gene_indispensability_score: 0.979

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Zfp707

Gene ontology

• Biological process: regulation of transcription by RNA polymerase II
• Cellular component: nucleus
• Molecular function: DNA-binding transcription factor activity, RNA polymerase II-specific;DNA binding;protein binding;metal ion binding