ZNF710

zinc finger protein 710, the group of Zinc fingers C2H2-type|MicroRNA protein coding host genes

Basic information

Region (hg38): 15:90001323-90082206

Links

ENSG00000140548 ∙ NCBI:374655 ∙ ∙ HGNC:25352 ∙ Uniprot:Q8N1W2 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the ZNF710 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the ZNF710 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous				1		1
missense			31	1		32
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	31	2	0

Variants in ZNF710

This is a list of pathogenic ClinVar variants found in the ZNF710 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
15-90067207-G-A		not specified	Uncertain significance (May 17, 2023)
15-90067219-G-C		not specified	Uncertain significance (Dec 27, 2023)
15-90067280-G-A		not specified	Uncertain significance (May 05, 2023)
15-90067355-G-C		not specified	Uncertain significance (Jul 14, 2021)
15-90067433-C-T		not specified	Uncertain significance (Nov 21, 2022)
15-90067471-G-A		not specified	Uncertain significance (Mar 13, 2023)
15-90067486-G-A		not specified	Uncertain significance (Jun 24, 2022)
15-90067550-C-T		not specified	Uncertain significance (Sep 29, 2022)
15-90067556-C-A		not specified	Uncertain significance (Apr 23, 2024)
15-90067573-G-A		not specified	Uncertain significance (May 03, 2023)
15-90067578-C-T			Likely benign (Feb 01, 2023)
15-90067603-G-A		not specified	Uncertain significance (Jun 09, 2022)
15-90067633-C-T		not specified	Uncertain significance (Aug 13, 2021)
15-90067642-C-T		not specified	Uncertain significance (Mar 24, 2023)
15-90067654-C-T		not specified	Uncertain significance (Apr 08, 2023)
15-90067660-C-T		not specified	Uncertain significance (Feb 10, 2022)
15-90067682-T-G			Likely benign (Feb 01, 2023)
15-90067687-G-A		not specified	Uncertain significance (May 15, 2024)
15-90067712-C-T		not specified	Uncertain significance (Feb 22, 2024)
15-90067802-A-C		not specified	Uncertain significance (Sep 20, 2023)
15-90067813-C-A		not specified	Uncertain significance (Jul 11, 2023)
15-90067817-G-C		not specified	Uncertain significance (Feb 27, 2023)
15-90067876-G-A		not specified	Uncertain significance (Feb 05, 2024)
15-90067892-G-A		not specified	Uncertain significance (May 13, 2024)
15-90067900-G-A		not specified	Uncertain significance (May 18, 2022)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
ZNF710	protein_coding	protein_coding	ENST00000268154	4	80815

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.990	0.00997	125737	0	6	125743	0.0000239

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	2.42	305	449	0.679	0.0000310	4375
Missense in Polyphen		110	217.31	0.50619		2115
Synonymous	0.451	199	207	0.960	0.0000164	1273
Loss of Function	4.02	2	22.7	0.0882	0.00000114	249

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.000189	0.000183
Ashkenazi Jewish	0.00	0.00
East Asian	0.00	0.00
Finnish	0.00	0.00
European (Non-Finnish)	0.0000177	0.0000176
Middle Eastern	0.00	0.00
South Asian	0.00	0.00
Other	0.00	0.00

dbNSFP

Source: dbNSFP

• Function: FUNCTION: May be involved in transcriptional regulation.
• Pathway: Gene expression (Transcription);Generic Transcription Pathway;RNA Polymerase II Transcription (Consensus)

Recessive Scores

• pRec: 0.115

Intolerance Scores

• loftool: 0.269
• rvis_EVS: -0.71
• rvis_percentile_EVS: 14.78

Haploinsufficiency Scores

• pHI: 0.156
• hipred: Y
• hipred_score: 0.662
• ghis: 0.469

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: N
• gene_indispensability_score: 0.215

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Zfp710

Gene ontology

• Biological process: regulation of transcription by RNA polymerase II
• Cellular component: nucleus
• Molecular function: DNA-binding transcription factor activity, RNA polymerase II-specific;DNA binding;metal ion binding