ZNF711

zinc finger protein 711, the group of Zinc fingers C2H2-type

Basic information

Region (hg38): X:85243991-85273362

Previous symbols: [ "ZNF6", "MRX65" ]

Links

ENSG00000147180 ∙ NCBI:7552 ∙ OMIM:314990 ∙ HGNC:13128 ∙ Uniprot:Q9Y462 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

• intellectual disability, X-linked 97 (Definitive), mode of inheritance: XLR
• intellectual disability, X-linked 97 (Strong), mode of inheritance: XL
• non-syndromic X-linked intellectual disability (Supportive), mode of inheritance: XL
• intellectual disability, X-linked 97 (Definitive), mode of inheritance: XL
• X-linked complex neurodevelopmental disorder (Definitive), mode of inheritance: XL

Clinical Genomic Database

Source: CGD

Condition	Inheritance	Intervention Categories	Intervention/Rationale	Manifestation Categories	References
Intellectual developmental disorder, X-linked 97	XL	General	Genetic knowledge may be beneficial related to issues such as selection of optimal supportive care, informed medical decision-making, prognostic considerations, and avoidance of unnecessary testing	Neurologic	19377476

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the ZNF711 gene.

• Intellectual disability, X-linked 97 (2 variants)
• not provided (1 variants)

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the ZNF711 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous			1	9	2	12
missense		1	61	6	1	69
nonsense		2				2
start loss						0
frameshift	2	3	2			7
inframe indel			3			3
splice donor/acceptor (+/-2bp)			1	1		2
splice region			2	2	1	5
non coding			13	3	13	29
Total	2	6	81	19	16

Variants in ZNF711

This is a list of pathogenic ClinVar variants found in the ZNF711 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
X-85244123-A-AGGC		Non-syndromic X-linked intellectual disability	Likely benign (Jun 14, 2016)
X-85244123-A-AGGCGGC		Non-syndromic X-linked intellectual disability	Benign (Jun 14, 2016)
X-85244127-GGCGGCGGCGGCGGCGGCGGCA-G		Intellectual disability, X-linked 97	Uncertain significance (Feb 18, 2022)
X-85244148-A-G		Intellectual disability, X-linked 97	Benign (Jan 13, 2018)
X-85244148-A-GGCGGCGGCG		Non-syndromic X-linked intellectual disability	Uncertain significance (Jun 14, 2016)
X-85244156-C-CG		Non-syndromic X-linked intellectual disability	Uncertain significance (Jun 14, 2016)
X-85245958-G-T		Intellectual disability, X-linked 97	Uncertain significance (Jan 13, 2018)
X-85245992-T-A		Intellectual disability, X-linked 97	Uncertain significance (Jan 13, 2018)
X-85246011-A-T		Intellectual disability, X-linked 97	Benign (Jan 13, 2018)
X-85246027-C-T		not specified • Intellectual disability, X-linked 97	Benign (Jan 13, 2018)
X-85247586-G-A		not specified	Uncertain significance (Oct 15, 2024)
X-85247588-G-A			Uncertain significance (May 17, 2024)
X-85247604-A-C		Inborn genetic diseases	Uncertain significance (Nov 30, 2022)
X-85247614-C-T			Likely benign (Feb 01, 2024)
X-85247633-A-G		Intellectual disability, X-linked 97	Uncertain significance (Nov 10, 2021)
X-85247643-A-C			Uncertain significance (Jul 31, 2022)
X-85247657-G-A			Likely benign (Jul 01, 2023)
X-85255243-ATTGT-A		not specified	Likely benign (May 02, 2017)
X-85255275-T-TA		Intellectual disability, X-linked 97	Pathogenic/Likely pathogenic (Sep 24, 2019)
X-85255298-A-G		not specified	Uncertain significance (Feb 28, 2023)
X-85255300-ATTG-A		Intellectual disability, X-linked 97	Uncertain significance (Dec 02, 2019)
X-85255304-T-G		Intellectual disability, X-linked 97	Uncertain significance (Mar 19, 2024)
X-85255381-G-A			Uncertain significance (Nov 07, 2023)
X-85255416-G-A			Likely benign (May 01, 2024)
X-85255455-G-T			Likely benign (Nov 01, 2023)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
ZNF711	protein_coding	protein_coding	ENST00000373165	7	29372

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.979	0.0211	125346	1	0	125347	0.00000399

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	2.40	165	278	0.594	0.0000194	5089
Missense in Polyphen		46	129.92	0.35406		2496
Synonymous	0.247	95	98.1	0.968	0.00000722	1361
Loss of Function	3.80	2	20.6	0.0970	0.00000174	386

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.00	0.00
Ashkenazi Jewish	0.00	0.00
East Asian	0.00	0.00
Finnish	0.00	0.00
European (Non-Finnish)	0.0000122	0.00000882
Middle Eastern	0.00	0.00
South Asian	0.00	0.00
Other	0.00	0.00

dbNSFP

Source: dbNSFP

• Function: FUNCTION: Transcription regulator required for brain development. Probably acts as a transcription factor that binds to the promoter of target genes and recruits PHF8 histone demethylase, leading to activate expression of genes involved in neuron development, such as KDM5C. {ECO:0000269|PubMed:20346720}.
• Pathway: Gene expression (Transcription);Generic Transcription Pathway;RNA Polymerase II Transcription (Consensus)

Recessive Scores

• pRec: 0.105

Intolerance Scores

• rvis_EVS: -0.23
• rvis_percentile_EVS: 37.11

Haploinsufficiency Scores

• pHI: 0.268
• hipred: Y
• hipred_score: 0.768
• ghis: 0.524

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: E
• gene_indispensability_score: 0.698

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Zfp711

Gene ontology

• Biological process: regulation of transcription by RNA polymerase II;positive regulation of transcription, DNA-templated
• Cellular component: nucleus
• Molecular function: RNA polymerase II regulatory region sequence-specific DNA binding;DNA-binding transcription factor activity, RNA polymerase II-specific;DNA-binding transcription factor activity;protein binding;chromatin DNA binding;sequence-specific DNA binding;metal ion binding