ZNF749

zinc finger protein 749, the group of Zinc fingers C2H2-type

Basic information

Region (hg38): 19:57435325-57447101

Links

ENSG00000186230 ∙ NCBI:388567 ∙ ∙ HGNC:32783 ∙ Uniprot:O43361 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the ZNF749 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the ZNF749 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			68	4		72
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	68	4	0

Variants in ZNF749

This is a list of pathogenic ClinVar variants found in the ZNF749 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
19-57441901-A-G		not specified	Uncertain significance (Apr 17, 2024)
19-57441955-A-T		not specified	Uncertain significance (Jun 01, 2023)
19-57441961-A-C		not specified	Uncertain significance (Mar 07, 2024)
19-57443309-A-G		not specified	Uncertain significance (Nov 13, 2024)
19-57443310-G-C		not specified	Uncertain significance (Sep 15, 2021)
19-57443314-G-A		not specified	Uncertain significance (Dec 03, 2024)
19-57443363-C-T		not specified	Uncertain significance (Feb 26, 2025)
19-57443365-A-G		not specified	Uncertain significance (Dec 28, 2023)
19-57443411-T-C		not specified	Likely benign (May 24, 2023)
19-57443431-G-A		not specified	Uncertain significance (Oct 13, 2023)
19-57443455-G-A		not specified	Uncertain significance (Feb 03, 2025)
19-57443464-C-T		not specified	Uncertain significance (Feb 11, 2022)
19-57443486-C-T		not specified	Uncertain significance (Aug 28, 2023)
19-57443608-T-C		not specified	Uncertain significance (Feb 28, 2023)
19-57443615-A-T		not specified	Uncertain significance (Jun 07, 2023)
19-57443618-G-A		not specified	Uncertain significance (Jul 30, 2024)
19-57443630-T-C		not specified	Uncertain significance (Apr 08, 2022)
19-57443670-C-A		not specified	Uncertain significance (Jul 25, 2023)
19-57443671-A-G		not specified	Uncertain significance (Nov 17, 2022)
19-57443740-T-C		not specified	Uncertain significance (Mar 16, 2024)
19-57443749-G-A		not specified	Uncertain significance (Nov 11, 2024)
19-57443777-G-A		not specified	Uncertain significance (Jun 12, 2023)
19-57443782-T-A		not specified	Uncertain significance (Jun 12, 2023)
19-57443812-A-G		not specified	Uncertain significance (Mar 10, 2025)
19-57443815-C-G		not specified	Uncertain significance (Aug 04, 2023)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
ZNF749	protein_coding	protein_coding	ENST00000334181	3	10157

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.0488	0.701	125513	0	3	125516	0.0000120

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	0.168	405	415	0.977	0.0000199	5236
Missense in Polyphen		83	88.655	0.93622		1111
Synonymous	-0.185	151	148	1.02	0.00000720	1365
Loss of Function	0.642	2	3.25	0.616	1.38e-7	36

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.0000646	0.0000626
Ashkenazi Jewish	0.00	0.00
East Asian	0.00	0.00
Finnish	0.00	0.00
European (Non-Finnish)	0.00	0.00
Middle Eastern	0.00	0.00
South Asian	0.0000732	0.0000653
Other	0.00	0.00

dbNSFP

Source: dbNSFP

• Function: FUNCTION: May be involved in transcriptional regulation.
• Pathway: Gene expression (Transcription);Generic Transcription Pathway;RNA Polymerase II Transcription (Consensus)

Recessive Scores

• pRec: 0.116

Intolerance Scores

• loftool: 0.899
• rvis_EVS: 0.2
• rvis_percentile_EVS: 67.46

Haploinsufficiency Scores

• pHI: 0.274
• hipred: N
• hipred_score: 0.112
• ghis: 0.501

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: N
• gene_indispensability_score: 0.412

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Gene ontology

• Biological process: regulation of transcription by RNA polymerase II
• Cellular component: nucleus
• Molecular function: DNA-binding transcription factor activity, RNA polymerase II-specific;DNA binding;metal ion binding