ZNF766

zinc finger protein 766, the group of Zinc fingers C2H2-type|MicroRNA protein coding host genes

Basic information

Region (hg38): 19:52269587-52296046

Links

ENSG00000196214 ∙ NCBI:90321 ∙ ∙ HGNC:28063 ∙ Uniprot:Q5HY98 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the ZNF766 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the ZNF766 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			35			35
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	35	0	0

Variants in ZNF766

This is a list of pathogenic ClinVar variants found in the ZNF766 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
19-52269623-C-G		not specified	Uncertain significance (Sep 26, 2023)
19-52269627-G-A		not specified	Uncertain significance (Dec 10, 2024)
19-52269627-G-C		not specified	Uncertain significance (Feb 13, 2023)
19-52282112-G-T		not specified	Uncertain significance (Jan 17, 2024)
19-52282132-G-A		not specified	Uncertain significance (Feb 27, 2025)
19-52282138-A-G		not specified	Uncertain significance (Feb 17, 2024)
19-52282141-G-C		not specified	Uncertain significance (Jun 22, 2021)
19-52282155-G-T		not specified	Uncertain significance (Sep 20, 2023)
19-52282178-T-G		not specified	Uncertain significance (Oct 09, 2024)
19-52282187-C-T		not specified	Uncertain significance (Oct 29, 2024)
19-52283338-C-T		not specified	Uncertain significance (Jan 16, 2025)
19-52283393-G-A		not specified	Uncertain significance (Feb 07, 2025)
19-52286216-CATT-C		Hypercalcemia, infantile, 1	Pathogenic (Jul 28, 2023)
19-52290135-A-C		not specified	Uncertain significance (Apr 10, 2023)
19-52290152-C-A		not specified	Uncertain significance (Jun 16, 2024)
19-52290171-A-C		not specified	Uncertain significance (Sep 05, 2024)
19-52290181-T-G		not specified	Uncertain significance (Mar 08, 2025)
19-52290194-C-G		not specified	Uncertain significance (Oct 05, 2023)
19-52290213-G-A		not specified	Uncertain significance (Apr 07, 2022)
19-52290216-A-G		not specified	Uncertain significance (Dec 27, 2022)
19-52290219-G-A		not specified	Uncertain significance (Feb 15, 2025)
19-52290228-T-C		not specified	Uncertain significance (Sep 09, 2021)
19-52290282-A-G		not specified	Uncertain significance (Oct 27, 2021)
19-52290288-A-G		not specified	Uncertain significance (Aug 05, 2024)
19-52290383-G-A		not specified	Uncertain significance (Feb 28, 2024)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
ZNF766	protein_coding	protein_coding	ENST00000439461	4	23154

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.00000925	0.192	124920	0	7	124927	0.0000280

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	0.113	238	243	0.980	0.0000112	3111
Missense in Polyphen		64	78.424	0.81608		1068
Synonymous	-0.0372	87	86.6	1.01	0.00000419	825
Loss of Function	-0.448	7	5.83	1.20	2.56e-7	66

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.0000946	0.0000938
Ashkenazi Jewish	0.00	0.00
East Asian	0.000114	0.000110
Finnish	0.00	0.00
European (Non-Finnish)	0.0000203	0.0000176
Middle Eastern	0.000114	0.000110
South Asian	0.0000329	0.0000327
Other	0.00	0.00

dbNSFP

Source: dbNSFP

• Function: FUNCTION: May be involved in transcriptional regulation.

Intolerance Scores

• loftool: 0.876
• rvis_EVS: -0.51
• rvis_percentile_EVS: 21.65

Haploinsufficiency Scores

• pHI: 0.192
• hipred: N
• hipred_score: 0.148
• ghis: 0.588

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: N
• gene_indispensability_score: 0.337

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Gene ontology

• Biological process: regulation of transcription by RNA polymerase II
• Cellular component: nucleus
• Molecular function: DNA-binding transcription factor activity, RNA polymerase II-specific;DNA binding;metal ion binding