ZNF770

zinc finger protein 770, the group of Zinc fingers C2H2-type

Basic information

Region (hg38): 15:34978341-34988287

Links

ENSG00000198146 ∙ NCBI:54989 ∙ ∙ HGNC:26061 ∙ Uniprot:Q6IQ21 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the ZNF770 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the ZNF770 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			26	2		28
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	26	2	0

Variants in ZNF770

This is a list of pathogenic ClinVar variants found in the ZNF770 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
15-34981594-G-A		not specified	Uncertain significance (Jun 11, 2021)
15-34981604-A-G		not specified	Uncertain significance (Mar 07, 2024)
15-34981670-G-A		not specified	Uncertain significance (Mar 07, 2024)
15-34981794-A-T		not specified	Uncertain significance (Aug 12, 2022)
15-34981798-G-A		not specified	Likely benign (Aug 02, 2021)
15-34981804-T-C		not specified	Uncertain significance (Mar 20, 2024)
15-34981825-A-T		not specified	Uncertain significance (Dec 28, 2023)
15-34981987-A-G		not specified	Uncertain significance (Jun 13, 2024)
15-34982042-T-C		not specified	Uncertain significance (Sep 14, 2022)
15-34982143-A-G		not specified	Uncertain significance (Aug 23, 2021)
15-34982164-G-A		not specified	Uncertain significance (Jan 06, 2023)
15-34982167-A-C		not specified	Uncertain significance (Oct 12, 2021)
15-34982188-C-T		not specified	Uncertain significance (Dec 19, 2023)
15-34982210-G-A		not specified	Uncertain significance (Apr 09, 2024)
15-34982211-C-A		not specified	Uncertain significance (May 20, 2024)
15-34982275-C-A		not specified	Uncertain significance (May 20, 2024)
15-34982284-G-A		not specified	Uncertain significance (Mar 25, 2024)
15-34982306-T-A		not specified	Uncertain significance (Aug 10, 2021)
15-34982401-C-T		not specified	Uncertain significance (Mar 11, 2022)
15-34982402-G-A		not specified	Uncertain significance (Feb 28, 2023)
15-34982446-T-C		not specified	Uncertain significance (Oct 06, 2021)
15-34982473-T-C		not specified	Uncertain significance (Apr 27, 2023)
15-34982693-A-T		not specified	Uncertain significance (Dec 27, 2023)
15-34982701-C-T		not specified	Likely benign (May 09, 2023)
15-34982834-T-C		not specified	Uncertain significance (Jan 17, 2024)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
ZNF770	protein_coding	protein_coding	ENST00000356321	1	9947

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.991	0.00923	125724	0	18	125742	0.0000716

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	0.841	305	349	0.873	0.0000167	4611
Missense in Polyphen		78	130.46	0.59788		1830
Synonymous	-2.34	156	123	1.27	0.00000576	1239
Loss of Function	4.04	2	22.9	0.0874	0.00000120	333

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.000152	0.000152
Ashkenazi Jewish	0.00	0.00
East Asian	0.000163	0.000163
Finnish	0.0000925	0.0000924
European (Non-Finnish)	0.0000806	0.0000791
Middle Eastern	0.000163	0.000163
South Asian	0.0000327	0.0000327
Other	0.00	0.00

dbNSFP

Source: dbNSFP

• Function: FUNCTION: May be involved in transcriptional regulation.
• Pathway: Gene expression (Transcription);Generic Transcription Pathway;RNA Polymerase II Transcription (Consensus)

Recessive Scores

• pRec: 0.0946

Intolerance Scores

• loftool: 0.584
• rvis_EVS: -0.44
• rvis_percentile_EVS: 24.53

Haploinsufficiency Scores

• pHI: 0.376
• hipred: N
• hipred_score: 0.423
• ghis: 0.602

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: E
• gene_indispensability_score: 0.670

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Zfp770

Gene ontology

• Biological process: regulation of transcription by RNA polymerase II
• Cellular component: nucleus
• Molecular function: DNA-binding transcription factor activity, RNA polymerase II-specific;DNA binding;metal ion binding