ZNF773

zinc finger protein 773, the group of Zinc fingers C2H2-type

Basic information

Region (hg38): 19:57499914-57518404

Previous symbols: [ "ZNF419B" ]

Links

ENSG00000152439 ∙ NCBI:374928 ∙ ∙ HGNC:30487 ∙ Uniprot:Q6PK81 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the ZNF773 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the ZNF773 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			34	2		36
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	34	2	0

Variants in ZNF773

This is a list of pathogenic ClinVar variants found in the ZNF773 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
19-57504708-T-G		not specified	Uncertain significance (Mar 31, 2022)
19-57504726-G-A		not specified	Likely benign (Jan 08, 2024)
19-57504726-G-T		not specified	Uncertain significance (Dec 03, 2021)
19-57504734-G-T		not specified	Uncertain significance (Aug 22, 2023)
19-57504748-A-G		not specified	Uncertain significance (Sep 29, 2022)
19-57504769-C-T		not specified	Uncertain significance (Apr 24, 2024)
19-57504781-C-G		not specified	Uncertain significance (Oct 25, 2022)
19-57505316-A-G		not specified	Uncertain significance (Feb 16, 2023)
19-57505395-T-C		not specified	Likely benign (Nov 22, 2022)
19-57506369-G-C		not specified	Uncertain significance (May 04, 2022)
19-57506384-G-A		not specified	Uncertain significance (Mar 08, 2024)
19-57506403-C-T		not specified	Uncertain significance (Oct 18, 2021)
19-57506414-G-A		not specified	Uncertain significance (Dec 07, 2023)
19-57506415-T-C		not specified	Uncertain significance (Aug 26, 2022)
19-57506429-G-A		not specified	Uncertain significance (Jan 02, 2024)
19-57506450-C-T		not specified	Uncertain significance (Oct 20, 2023)
19-57506480-G-A		not specified	Uncertain significance (Feb 21, 2024)
19-57506480-G-C		not specified	Uncertain significance (Feb 16, 2023)
19-57506501-A-T		not specified	Uncertain significance (Aug 10, 2021)
19-57506517-A-G		not specified	Uncertain significance (Jan 17, 2024)
19-57506576-G-T		not specified	Uncertain significance (Feb 15, 2023)
19-57506609-G-C		not specified	Uncertain significance (May 31, 2023)
19-57506639-G-C		not specified	Uncertain significance (Apr 13, 2023)
19-57506645-T-C		not specified	Uncertain significance (May 09, 2023)
19-57506661-G-A		not specified	Uncertain significance (Apr 27, 2023)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
ZNF773	protein_coding	protein_coding	ENST00000282292	4	18490

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.00000484	0.424	125655	0	93	125748	0.000370

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	-1.15	278	229	1.21	0.0000112	2938
Missense in Polyphen		100	86.88	1.151		1154
Synonymous	-0.761	87	78.4	1.11	0.00000375	792
Loss of Function	0.508	9	10.8	0.833	4.54e-7	145

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.000843	0.000843
Ashkenazi Jewish	0.000397	0.000397
East Asian	0.000762	0.000761
Finnish	0.0000462	0.0000462
European (Non-Finnish)	0.000361	0.000360
Middle Eastern	0.000762	0.000761
South Asian	0.000425	0.000425
Other	0.000163	0.000163

dbNSFP

Source: dbNSFP

• Function: FUNCTION: May be involved in transcriptional regulation.
• Pathway: Gene expression (Transcription);Generic Transcription Pathway;RNA Polymerase II Transcription (Consensus)

Intolerance Scores

• loftool: 0.722
• rvis_EVS: -0.27
• rvis_percentile_EVS: 34.71

Haploinsufficiency Scores

• pHI: 0.270
• hipred: N
• hipred_score: 0.112
• ghis: 0.538

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: E
• gene_indispensability_score: 0.716

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Zfp772

Gene ontology

• Biological process: regulation of transcription, DNA-templated
• Cellular component: nucleus
• Molecular function: DNA binding;metal ion binding