ZNF774

zinc finger protein 774, the group of Zinc fingers C2H2-type

Basic information

Region (hg38): 15:90352283-90369146

Links

ENSG00000196391 ∙ NCBI:342132 ∙ ∙ HGNC:33108 ∙ Uniprot:Q6NX45 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the ZNF774 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the ZNF774 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous					1	1
missense			25	2		27
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	25	2	1

Variants in ZNF774

This is a list of pathogenic ClinVar variants found in the ZNF774 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
15-90358891-G-C		not specified	Uncertain significance (May 31, 2023)
15-90358930-A-G		not specified	Uncertain significance (Apr 17, 2024)
15-90360130-A-G		not specified	Uncertain significance (Oct 12, 2022)
15-90360176-A-G			Benign (Dec 14, 2017)
15-90360201-C-T		not specified	Uncertain significance (Sep 01, 2021)
15-90360214-G-A		not specified	Likely benign (Mar 21, 2022)
15-90360331-T-C		not specified	Uncertain significance (Feb 26, 2024)
15-90360346-C-T			Uncertain significance (Feb 04, 2021)
15-90360363-C-G		not specified	Uncertain significance (Nov 09, 2021)
15-90360397-A-T		not specified	Uncertain significance (Mar 04, 2024)
15-90360418-C-T		not specified	Uncertain significance (Oct 26, 2021)
15-90360423-C-A		not specified	Uncertain significance (Nov 07, 2022)
15-90360500-C-G		not specified	Uncertain significance (Aug 05, 2023)
15-90360567-C-T		not specified	Uncertain significance (Dec 15, 2022)
15-90360568-G-A		not specified	Uncertain significance (May 23, 2024)
15-90360582-A-G		not specified	Uncertain significance (Mar 07, 2023)
15-90360586-T-C		not specified	Uncertain significance (Dec 15, 2022)
15-90360622-C-T		not specified	Uncertain significance (Dec 26, 2023)
15-90360639-A-G		not specified	Uncertain significance (Oct 13, 2021)
15-90360696-A-G		not specified	Uncertain significance (May 31, 2022)
15-90360713-T-A		not specified	Uncertain significance (Jan 23, 2023)
15-90360736-A-G		not specified	Uncertain significance (Jan 17, 2024)
15-90360796-C-G		not specified	Uncertain significance (Aug 08, 2022)
15-90360820-A-G		not specified	Uncertain significance (Nov 17, 2022)
15-90360861-G-C		not specified	Uncertain significance (Jul 13, 2022)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
ZNF774	protein_coding	protein_coding	ENST00000354377	3	13848

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
2.28e-15	0.00852	125505	0	243	125748	0.000967

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	0.169	261	269	0.971	0.0000145	3220
Missense in Polyphen		104	96.062	1.0826		1142
Synonymous	1.61	83	104	0.799	0.00000647	860
Loss of Function	-0.170	22	21.2	1.04	0.00000131	237

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.00106	0.00105
Ashkenazi Jewish	0.000198	0.000198
East Asian	0.000436	0.000435
Finnish	0.000832	0.000832
European (Non-Finnish)	0.00148	0.00148
Middle Eastern	0.000436	0.000435
South Asian	0.000457	0.000457
Other	0.00165	0.00147

dbNSFP

Source: dbNSFP

• Function: FUNCTION: May be involved in transcriptional regulation. {ECO:0000250}.
• Pathway: Gene expression (Transcription);Generic Transcription Pathway;RNA Polymerase II Transcription (Consensus)

Intolerance Scores

• loftool: 0.889
• rvis_EVS: 0.6
• rvis_percentile_EVS: 82.78

Haploinsufficiency Scores

• pHI: 0.142
• hipred: N
• hipred_score: 0.168
• ghis: 0.437

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: N
• gene_indispensability_score: 0.303

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Gene ontology

• Biological process: regulation of transcription by RNA polymerase II
• Cellular component: nucleus
• Molecular function: DNA-binding transcription factor activity, RNA polymerase II-specific;DNA binding;protein binding;metal ion binding