ZNF778

zinc finger protein 778, the group of Zinc fingers C2H2-type

Basic information

Region (hg38): 16:89217703-89237141

Links

ENSG00000170100 ∙ NCBI:197320 ∙ ∙ HGNC:26479 ∙ Uniprot:Q96MU6 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the ZNF778 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the ZNF778 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous				2	2	4
missense			86	6	1	93
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding				5		5
Total	0	0	86	13	3

Variants in ZNF778

This is a list of pathogenic ClinVar variants found in the ZNF778 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
16-89221146-G-A		not specified	Uncertain significance (Feb 14, 2023)
16-89222111-C-G		not specified	Uncertain significance (Feb 02, 2024)
16-89222118-T-G		not specified	Uncertain significance (Nov 09, 2023)
16-89222140-A-G			Likely benign (Feb 25, 2018)
16-89222173-A-G		not specified	Uncertain significance (Apr 20, 2024)
16-89222182-A-G		not specified	Uncertain significance (Nov 21, 2023)
16-89223163-G-A		not specified	Uncertain significance (Jun 22, 2021)
16-89223178-G-A		not specified	Uncertain significance (Dec 21, 2022)
16-89223205-T-C		not specified	Uncertain significance (Mar 19, 2024)
16-89223212-T-C		not specified	Uncertain significance (Oct 25, 2022)
16-89224726-C-G		not specified	Uncertain significance (Feb 21, 2024)
16-89224749-A-G		not specified	Benign (Nov 04, 2015)
16-89224761-A-G		not specified	Uncertain significance (Oct 12, 2022)
16-89224791-C-T		not specified	Uncertain significance (May 02, 2024)
16-89225555-A-C		not specified	Uncertain significance (Apr 26, 2024)
16-89225561-G-A		not specified	Uncertain significance (Sep 25, 2023)
16-89225561-G-T		not specified	Uncertain significance (Nov 22, 2023)
16-89225588-G-A		not specified	Uncertain significance (Feb 22, 2023)
16-89225611-G-A		not specified	Likely benign (Dec 01, 2022)
16-89225624-C-T		not specified	Uncertain significance (Sep 22, 2023)
16-89226697-A-G		not specified	Uncertain significance (Oct 17, 2023)
16-89226728-G-A		not specified	Uncertain significance (May 21, 2024)
16-89226754-G-A		not specified	Uncertain significance (Dec 06, 2022)
16-89226766-C-G		not specified	Uncertain significance (May 17, 2023)
16-89226778-G-A		not specified	Uncertain significance (Apr 27, 2023)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
ZNF778	protein_coding	protein_coding	ENST00000433976	5	11246

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.00000713	0.300	125723	0	13	125736	0.0000517

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	-3.26	596	410	1.45	0.0000224	4760
Missense in Polyphen		202	134.59	1.5008		1542
Synonymous	-4.94	239	160	1.50	0.00000979	1385
Loss of Function	0.115	8	8.36	0.957	4.38e-7	84

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.0000879	0.0000879
Ashkenazi Jewish	0.00	0.00
East Asian	0.00	0.00
Finnish	0.00	0.00
European (Non-Finnish)	0.00000907	0.00000879
Middle Eastern	0.00	0.00
South Asian	0.000296	0.000294
Other	0.00	0.00

dbNSFP

Source: dbNSFP

• Function: FUNCTION: May be involved in transcriptional regulation. {ECO:0000250}.
• Pathway: Gene expression (Transcription);Generic Transcription Pathway;RNA Polymerase II Transcription (Consensus)

Intolerance Scores

• loftool: 0.965
• rvis_EVS: 1.3
• rvis_percentile_EVS: 93.92

Haploinsufficiency Scores

• hipred: N
• hipred_score: 0.112
• ghis: 0.460

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: N
• gene_indispensability_score: 0.122

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Zfp26

Gene ontology

• Biological process: regulation of transcription by RNA polymerase II
• Cellular component: nucleus
• Molecular function: DNA-binding transcription factor activity, RNA polymerase II-specific;DNA binding;protein binding;metal ion binding