ZNF783

zinc finger protein 783, the group of Zinc fingers C2H2-type

Basic information

Region (hg38): 7:149262171-149297302

Links

ENSG00000204946 ∙ NCBI:100289678 ∙ ∙ HGNC:27222 ∙ Uniprot:Q6ZMS7 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the ZNF783 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the ZNF783 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			60	4		64
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	60	4	0

Variants in ZNF783

This is a list of pathogenic ClinVar variants found in the ZNF783 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
7-149262340-G-A		not specified	Uncertain significance (Feb 28, 2024)
7-149262347-C-A		not specified	Uncertain significance (Dec 19, 2022)
7-149266390-A-G		not specified	Uncertain significance (Aug 10, 2021)
7-149266425-A-G		not specified	Uncertain significance (Dec 01, 2022)
7-149266442-G-C		not specified	Uncertain significance (Aug 28, 2023)
7-149266444-C-T		not specified	Uncertain significance (May 04, 2023)
7-149266455-G-A		not specified	Uncertain significance (Apr 27, 2023)
7-149266455-G-T		not specified	Uncertain significance (Apr 25, 2022)
7-149266475-G-C		not specified	Uncertain significance (Jun 27, 2022)
7-149266498-G-A		not specified	Uncertain significance (May 05, 2023)
7-149266575-G-A		not specified	Uncertain significance (Apr 07, 2023)
7-149266624-A-C		not specified	Uncertain significance (Sep 01, 2021)
7-149266644-C-T		not specified	Uncertain significance (May 16, 2023)
7-149266645-G-A		not specified	Uncertain significance (Oct 04, 2022)
7-149266653-A-G		not specified	Uncertain significance (Dec 21, 2022)
7-149266669-T-C		not specified	Uncertain significance (May 03, 2023)
7-149266688-G-T		not specified	Uncertain significance (Feb 26, 2024)
7-149266695-C-T		not specified	Uncertain significance (Jun 12, 2023)
7-149266696-G-A		not specified	Uncertain significance (Dec 07, 2021)
7-149266705-C-T		not specified	Uncertain significance (Jul 26, 2021)
7-149266716-G-T		not specified	Uncertain significance (Feb 16, 2023)
7-149266846-G-A		not specified	Uncertain significance (Jun 17, 2022)
7-149267105-A-G		not specified	Uncertain significance (Feb 28, 2023)
7-149267127-C-G		not specified	Uncertain significance (Mar 20, 2023)
7-149267129-C-T		not specified	Uncertain significance (Jul 12, 2023)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
ZNF783	protein_coding	protein_coding	ENST00000434415	6	35132

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.00000217	0.905	125683	0	65	125748	0.000258

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	0.253	310	323	0.960	0.0000222	3445
Missense in Polyphen		87	98.2	0.88595		1089
Synonymous	-1.07	154	138	1.12	0.00000936	1142
Loss of Function	1.64	12	19.9	0.604	0.00000106	220

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.000367	0.000360
Ashkenazi Jewish	0.00	0.00
East Asian	0.00	0.00
Finnish	0.0000462	0.0000462
European (Non-Finnish)	0.000316	0.000308
Middle Eastern	0.00	0.00
South Asian	0.000559	0.000555
Other	0.000358	0.000326

dbNSFP

Source: dbNSFP

• Function: FUNCTION: May be involved in transcriptional regulation.

Haploinsufficiency Scores

• pHI: 0.0918
• hipred: N
• hipred_score: 0.210
• ghis: 0.537

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• gene_indispensability_pred: N
• gene_indispensability_score: 0.158

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Gene ontology

• Biological process: regulation of transcription, DNA-templated
• Cellular component: nucleus
• Molecular function: DNA binding;protein binding;identical protein binding