ZNF791

zinc finger protein 791, the group of Zinc fingers C2H2-type

Basic information

Region (hg38): 19:12610918-12633840

Links

ENSG00000173875 ∙ NCBI:163049 ∙ ∙ HGNC:26895 ∙ Uniprot:Q3KP31 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the ZNF791 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the ZNF791 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			26	3		29
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	26	3	0

Variants in ZNF791

This is a list of pathogenic ClinVar variants found in the ZNF791 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
19-12623710-C-G		not specified	Uncertain significance (Mar 29, 2022)
19-12623740-A-G		not specified	Uncertain significance (Feb 13, 2025)
19-12623807-C-G		not specified	Likely benign (Apr 07, 2023)
19-12624652-G-A		not specified	Uncertain significance (Aug 05, 2024)
19-12624664-G-A		not specified	Uncertain significance (Dec 20, 2022)
19-12624679-G-A		not specified	Uncertain significance (Feb 23, 2023)
19-12627766-A-T		not specified	Uncertain significance (Jun 07, 2023)
19-12627861-G-A		not specified	Uncertain significance (Oct 24, 2024)
19-12627917-A-G		not specified	Uncertain significance (Mar 06, 2025)
19-12628014-G-A		not specified	Uncertain significance (Feb 13, 2025)
19-12628067-C-T		not specified	Uncertain significance (Sep 06, 2022)
19-12628076-A-T		not specified	Uncertain significance (Jul 26, 2024)
19-12628115-G-A		not specified	Uncertain significance (Feb 26, 2024)
19-12628161-C-T		not specified	Uncertain significance (Jun 11, 2021)
19-12628205-A-G		not specified	Uncertain significance (Jan 10, 2023)
19-12628331-G-A		not specified	Uncertain significance (Dec 07, 2024)
19-12628382-A-G		not specified	Uncertain significance (Feb 27, 2023)
19-12628412-A-C		not specified	Uncertain significance (May 09, 2024)
19-12628449-A-G		not specified	Likely benign (Oct 14, 2023)
19-12628485-A-G		not specified	Uncertain significance (Jan 23, 2023)
19-12628490-A-G		not specified	Uncertain significance (Mar 06, 2023)
19-12628542-G-A		not specified	Uncertain significance (Jan 30, 2024)
19-12628588-G-C		not specified	Uncertain significance (Feb 12, 2025)
19-12628664-A-G		not specified	Uncertain significance (May 17, 2023)
19-12628812-G-A		not specified	Uncertain significance (Feb 05, 2024)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
ZNF791	protein_coding	protein_coding	ENST00000343325	4	21004

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.134	0.866	125728	0	20	125748	0.0000795

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	1.52	234	309	0.757	0.0000155	3843
Missense in Polyphen		65	133.97	0.4852		1709
Synonymous	1.00	90	103	0.875	0.00000524	996
Loss of Function	3.29	6	23.0	0.261	0.00000158	279

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.000214	0.000214
Ashkenazi Jewish	0.00	0.00
East Asian	0.00	0.00
Finnish	0.0000925	0.0000924
European (Non-Finnish)	0.0000616	0.0000615
Middle Eastern	0.00	0.00
South Asian	0.000170	0.000163
Other	0.00	0.00

dbNSFP

Source: dbNSFP

• Function: FUNCTION: May be involved in transcriptional regulation.
• Pathway: Gene expression (Transcription);Generic Transcription Pathway;RNA Polymerase II Transcription (Consensus)

Intolerance Scores

• loftool: 0.609
• rvis_EVS: -0.63
• rvis_percentile_EVS: 17.03

Haploinsufficiency Scores

• pHI: 0.131
• hipred: N
• hipred_score: 0.326
• ghis: 0.620

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: E
• gene_indispensability_score: 0.655

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Zfp791

Gene ontology

• Biological process: regulation of transcription by RNA polymerase II
• Cellular component: nucleus
• Molecular function: DNA-binding transcription factor activity, RNA polymerase II-specific;DNA binding;metal ion binding