ZNF799

zinc finger protein 799, the group of Zinc fingers C2H2-type

Basic information

Region (hg38): 19:12390016-12401271

Previous symbols: [ "ZNF842" ]

Links

ENSG00000196466 ∙ NCBI:90576 ∙ OMIM:619916 ∙ HGNC:28071 ∙ Uniprot:Q96GE5 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

• Tourette syndrome (No Known Disease Relationship), mode of inheritance: Unknown

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the ZNF799 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the ZNF799 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			38	1		39
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	38	1	0

Variants in ZNF799

This is a list of pathogenic ClinVar variants found in the ZNF799 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
19-12390507-C-A		not specified	Uncertain significance (Apr 08, 2024)
19-12390512-G-A		not specified	Uncertain significance (Oct 20, 2024)
19-12390560-T-C		not specified	Uncertain significance (Feb 14, 2023)
19-12390569-T-C		not specified	Uncertain significance (May 16, 2023)
19-12390629-C-T		not specified	Uncertain significance (Sep 29, 2023)
19-12390633-C-T		not specified	Uncertain significance (May 26, 2023)
19-12390635-T-C		not specified	Uncertain significance (Aug 14, 2024)
19-12390650-G-A		not specified	Uncertain significance (Apr 09, 2024)
19-12390658-T-A		not specified	Uncertain significance (Dec 04, 2024)
19-12390681-G-A		not specified	Uncertain significance (Apr 29, 2024)
19-12390723-G-A		not specified	Likely benign (Oct 17, 2024)
19-12390743-C-A		not specified	Uncertain significance (Jun 29, 2022)
19-12390807-G-C		not specified	Uncertain significance (Nov 09, 2024)
19-12390834-G-C		not specified	Uncertain significance (May 31, 2023)
19-12390881-C-A		not specified	Uncertain significance (Jan 26, 2023)
19-12390941-C-G		not specified	Uncertain significance (May 07, 2024)
19-12391073-G-A		not specified	Uncertain significance (Feb 08, 2023)
19-12391106-C-T		not specified	Uncertain significance (Dec 07, 2021)
19-12391148-G-T		not specified	Uncertain significance (Dec 14, 2023)
19-12391160-T-C		not specified	Likely benign (Nov 15, 2024)
19-12391168-C-G		not specified	Uncertain significance (Dec 21, 2023)
19-12391197-C-T		not specified	Uncertain significance (Aug 14, 2024)
19-12391238-T-G		not specified	Uncertain significance (Sep 28, 2022)
19-12391242-T-C		not specified	Uncertain significance (Jan 03, 2024)
19-12391287-C-T		not specified	Uncertain significance (Apr 11, 2023)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
ZNF799	protein_coding	protein_coding	ENST00000430385	4	11256

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.0166	0.725	124997	0	1	124998	0.00000400

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	-1.14	386	328	1.18	0.0000166	4278
Missense in Polyphen		124	118.21	1.0489		1647
Synonymous	-0.906	125	113	1.11	0.00000597	1107
Loss of Function	0.723	3	4.69	0.640	2.61e-7	57

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.00	0.00
Ashkenazi Jewish	0.00	0.00
East Asian	0.00	0.00
Finnish	0.0000464	0.0000464
European (Non-Finnish)	0.00	0.00
Middle Eastern	0.00	0.00
South Asian	0.00	0.00
Other	0.00	0.00

dbNSFP

Source: dbNSFP

• Function: FUNCTION: May be involved in transcriptional regulation.
• Pathway: Gene expression (Transcription);Generic Transcription Pathway;RNA Polymerase II Transcription (Consensus)

Recessive Scores

• pRec: 0.105

Intolerance Scores

• rvis_EVS: 0.71
• rvis_percentile_EVS: 85.68

Haploinsufficiency Scores

• hipred: N
• hipred_score: 0.132
• ghis: 0.480

Essentials

• essential_gene_CRISPR: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: N
• gene_indispensability_score: 0.0979

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Zfp799

Gene ontology

• Biological process: regulation of transcription by RNA polymerase II
• Cellular component: nucleus
• Molecular function: DNA-binding transcription factor activity, RNA polymerase II-specific;DNA binding;metal ion binding