ZNF836

zinc finger protein 836, the group of Zinc fingers C2H2-type

Basic information

Region (hg38): 19:52153864-52171643

Links

ENSG00000196267 ∙ NCBI:162962 ∙ ∙ HGNC:34333 ∙ Uniprot:Q6ZNA1 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the ZNF836 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the ZNF836 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			75	4		79
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	75	4	0

Variants in ZNF836

This is a list of pathogenic ClinVar variants found in the ZNF836 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
19-52154942-G-A		not specified	Uncertain significance (Oct 07, 2024)
19-52154987-A-T		not specified	Uncertain significance (Feb 01, 2023)
19-52155074-G-C		not specified	Uncertain significance (Sep 16, 2021)
19-52155080-C-G		not specified	Uncertain significance (Jun 26, 2024)
19-52155270-G-T		not specified	Uncertain significance (Jun 10, 2024)
19-52155293-C-T		not specified	Uncertain significance (Aug 16, 2021)
19-52155294-G-A		not specified	Uncertain significance (Dec 06, 2021)
19-52155378-G-A		not specified	Uncertain significance (Aug 11, 2022)
19-52155391-G-T		not specified	Uncertain significance (Jul 02, 2024)
19-52155395-G-C		not specified	Uncertain significance (Aug 10, 2021)
19-52155450-T-C		not specified	Uncertain significance (Mar 19, 2024)
19-52155464-T-C		not specified	Uncertain significance (Mar 25, 2024)
19-52155468-A-G		not specified	Uncertain significance (May 27, 2022)
19-52155548-T-C		not specified	Uncertain significance (Jan 03, 2024)
19-52155579-C-T		not specified	Uncertain significance (Dec 30, 2024)
19-52155605-G-A		not specified	Uncertain significance (May 15, 2024)
19-52155657-T-C		not specified	Uncertain significance (Dec 11, 2023)
19-52155662-G-A		not specified	Uncertain significance (Dec 17, 2024)
19-52155699-C-T		not specified	Uncertain significance (May 03, 2023)
19-52155720-G-A		not specified	Uncertain significance (Aug 08, 2022)
19-52155773-G-A		not specified	Uncertain significance (Apr 09, 2024)
19-52155811-G-T		not specified	Uncertain significance (Jan 23, 2025)
19-52155831-C-A		not specified	Uncertain significance (Nov 12, 2021)
19-52155849-A-G		not specified	Uncertain significance (Jan 27, 2025)
19-52155849-A-T		not specified	Uncertain significance (Jun 07, 2023)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
ZNF836	protein_coding	protein_coding	ENST00000322146	3	17780

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.0000103	0.110	125604	0	22	125626	0.0000876

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	0.364	467	490	0.954	0.0000255	6219
Missense in Polyphen		223	250.95	0.88861		3230
Synonymous	0.484	163	171	0.953	0.00000864	1684
Loss of Function	-1.46	6	3.18	1.88	1.36e-7	36

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.000190	0.000186
Ashkenazi Jewish	0.00	0.00
East Asian	0.000602	0.000598
Finnish	0.00	0.00
European (Non-Finnish)	0.0000447	0.0000440
Middle Eastern	0.000602	0.000598
South Asian	0.0000674	0.0000653
Other	0.000164	0.000164

dbNSFP

Source: dbNSFP

• Function: FUNCTION: May be involved in transcriptional regulation.

Intolerance Scores

• loftool: 0.814
• rvis_EVS: -0.35
• rvis_percentile_EVS: 29.43

Haploinsufficiency Scores

• hipred: N
• hipred_score: 0.112
• ghis: 0.537

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• gene_indispensability_pred: N
• gene_indispensability_score: 0.153

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	High
Cancer	Medium	Medium	Medium

Gene ontology

• Biological process: regulation of transcription by RNA polymerase II
• Cellular component: nucleus
• Molecular function: DNA-binding transcription factor activity, RNA polymerase II-specific;DNA binding;metal ion binding