ZNF846

zinc finger protein 846, the group of Zinc fingers C2H2-type

Basic information

Region (hg38): 19:9751993-9793180

Links

ENSG00000196605 ∙ NCBI:162993 ∙ ∙ HGNC:27260 ∙ Uniprot:Q147U1 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the ZNF846 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the ZNF846 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous				1		1
missense			26			26
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	26	1	0

Variants in ZNF846

This is a list of pathogenic ClinVar variants found in the ZNF846 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
19-9757528-G-C		not specified	Uncertain significance (Dec 12, 2023)
19-9757582-T-A		not specified	Uncertain significance (Mar 01, 2023)
19-9757593-A-G		not specified	Uncertain significance (Dec 13, 2022)
19-9757609-A-G		not specified	Uncertain significance (Dec 02, 2022)
19-9757618-A-G		not specified	Uncertain significance (Nov 18, 2022)
19-9757711-C-T		not specified	Uncertain significance (Jan 07, 2022)
19-9757722-C-T		not specified	Uncertain significance (Jun 07, 2023)
19-9757773-G-A		not specified	Uncertain significance (Jul 09, 2021)
19-9757842-T-C		not specified	Uncertain significance (Apr 07, 2023)
19-9757863-T-C		not specified	Uncertain significance (Feb 11, 2022)
19-9757948-G-A		not specified	Uncertain significance (Sep 15, 2021)
19-9757974-C-A		not specified	Uncertain significance (Jan 05, 2022)
19-9758064-T-C		not specified	Uncertain significance (Jan 02, 2024)
19-9758065-A-T		not specified	Uncertain significance (May 29, 2024)
19-9758088-C-T		not specified	Uncertain significance (Jan 24, 2024)
19-9758163-C-T		not specified	Uncertain significance (Dec 14, 2021)
19-9758371-T-C		not specified	Uncertain significance (May 31, 2023)
19-9758392-T-C		not specified	Uncertain significance (Dec 14, 2021)
19-9758419-G-A		not specified	Uncertain significance (May 04, 2022)
19-9758509-T-G		not specified	Uncertain significance (Jan 23, 2024)
19-9758586-T-G		not specified	Uncertain significance (Jul 25, 2023)
19-9758603-A-C		not specified	Uncertain significance (Oct 29, 2021)
19-9758640-T-C		not specified	Uncertain significance (Apr 07, 2023)
19-9758672-A-G			Likely benign (Oct 01, 2022)
19-9762108-C-T		not specified	Uncertain significance (May 29, 2024)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
ZNF846	protein_coding	protein_coding	ENST00000397902	5	41188

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.00000125	0.118	125692	2	34	125728	0.000143

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	-0.807	308	271	1.14	0.0000126	3518
Missense in Polyphen		86	75.433	1.1401		1030
Synonymous	-0.236	97	94.1	1.03	0.00000434	957
Loss of Function	-0.671	8	6.20	1.29	2.62e-7	80

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.00182	0.00164
Ashkenazi Jewish	0.00	0.00
East Asian	0.00	0.00
Finnish	0.00	0.00
European (Non-Finnish)	0.0000444	0.0000440
Middle Eastern	0.00	0.00
South Asian	0.0000329	0.0000327
Other	0.000166	0.000163

dbNSFP

Source: dbNSFP

• Function: FUNCTION: May be involved in transcriptional regulation. {ECO:0000250}.

Intolerance Scores

• loftool: 0.748
• rvis_EVS: 0.47
• rvis_percentile_EVS: 78.74

Haploinsufficiency Scores

• hipred: N
• hipred_score: 0.112
• ghis: 0.491

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: N
• gene_indispensability_score: 0.000103

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Zfp846

Gene ontology

• Biological process: regulation of transcription by RNA polymerase II
• Cellular component: nucleus
• Molecular function: DNA-binding transcription factor activity, RNA polymerase II-specific;DNA binding;protein binding;metal ion binding