ZNF850

zinc finger protein 850, the group of Zinc fingers C2H2-type

Basic information

Region (hg38): 19:36714383-36772825

Previous symbols: [ "ZNF850P" ]

Links

ENSG00000267041 ∙ NCBI:342892 ∙ ∙ HGNC:27994 ∙ Uniprot:A8MQ14 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the ZNF850 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the ZNF850 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			48	3		51
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	48	3	0

Variants in ZNF850

This is a list of pathogenic ClinVar variants found in the ZNF850 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
19-36718989-G-A		not specified	Uncertain significance (Jul 14, 2023)
19-36719152-A-G		not specified	Uncertain significance (Apr 01, 2024)
19-36719227-C-T		not specified	Uncertain significance (May 04, 2023)
19-36719332-C-T		not specified	Likely benign (Mar 16, 2022)
19-36719395-G-A		not specified	Uncertain significance (Jul 15, 2021)
19-36719679-C-T		not specified	Uncertain significance (Apr 24, 2023)
19-36719952-G-C		not specified	Uncertain significance (Dec 21, 2022)
19-36719961-A-G		not specified	Uncertain significance (Oct 17, 2023)
19-36719962-G-T		not specified	Uncertain significance (Oct 29, 2021)
19-36719965-C-T		not specified	Uncertain significance (Aug 10, 2021)
19-36720034-C-T		not specified	Uncertain significance (Dec 14, 2023)
19-36720310-G-A		not specified	Uncertain significance (May 21, 2024)
19-36720322-A-G		not specified	Uncertain significance (Dec 14, 2021)
19-36720351-C-T		not specified	Uncertain significance (Sep 16, 2021)
19-36720352-G-A		not specified	Uncertain significance (Mar 15, 2024)
19-36720508-G-A		not specified	Uncertain significance (Apr 15, 2024)
19-36720512-G-C		not specified	Uncertain significance (Feb 16, 2023)
19-36720526-A-C		not specified	Uncertain significance (Dec 07, 2023)
19-36720592-G-A		not specified	Uncertain significance (Jan 04, 2022)
19-36747811-G-T		not specified	Uncertain significance (Sep 26, 2023)
19-36748063-C-T		not specified	Uncertain significance (Nov 17, 2022)
19-36748290-C-T		not specified	Uncertain significance (Sep 06, 2022)
19-36748314-C-T		not specified	Uncertain significance (Aug 02, 2021)
19-36748398-C-T		not specified	Uncertain significance (Sep 15, 2021)
19-36748494-G-C		not specified	Uncertain significance (Aug 17, 2022)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
ZNF850	protein_coding	protein_coding	ENST00000591344	4	58443

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.721	0.267	0	0	0	0	0.00

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	3.00	364	565	0.645	0.0000292	7015
Missense in Polyphen		164	275.31	0.59569		3481
Synonymous	2.64	140	186	0.753	0.00000894	1977
Loss of Function	1.90	0	4.21	0.00	1.78e-7	62

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.00	0.00
Ashkenazi Jewish	0.00	0.00
East Asian	0.00	0.00
Finnish	0.00	0.00
European (Non-Finnish)	0.00	0.00
Middle Eastern	0.00	0.00
South Asian	0.00	0.00
Other	0.00	0.00

dbNSFP

Source: dbNSFP

• Function: FUNCTION: May be involved in transcriptional regulation. {ECO:0000250}.

Haploinsufficiency Scores

• hipred: N
• hipred_score: 0.259
• ghis: 0.396

Essentials

• essential_gene_CRISPR: N

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Gene ontology

• Biological process: regulation of transcription, DNA-templated
• Cellular component: nucleus
• Molecular function: DNA binding;metal ion binding