1-111766501-C-A
Variant summary
Our verdict is Benign. Variant got -12 ACMG points: 0P and 12B. BP4_StrongBA1
The NM_007204.5(DDX20):c.2077C>A(p.Arg693Ser) variant causes a missense change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.132 in 1,613,790 control chromosomes in the GnomAD database, including 17,321 homozygotes. In-silico tool predicts a benign outcome for this variant. 14/20 in silico tools predict a benign outcome for this variant. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar. Another nucleotide change resulting in the same amino acid substitution has been previously reported as Likely benign in UniProt.
Frequency
Consequence
NM_007204.5 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Benign. Variant got -12 ACMG points.
Transcripts
RefSeq
Ensembl
Frequencies
GnomAD3 genomes AF: 0.190 AC: 28798AN: 151906Hom.: 3760 Cov.: 32
GnomAD3 exomes AF: 0.121 AC: 30365AN: 251332Hom.: 2589 AF XY: 0.118 AC XY: 16002AN XY: 135866
GnomAD4 exome AF: 0.126 AC: 184170AN: 1461766Hom.: 13556 Cov.: 34 AF XY: 0.125 AC XY: 90726AN XY: 727184
GnomAD4 genome AF: 0.190 AC: 28842AN: 152024Hom.: 3765 Cov.: 32 AF XY: 0.185 AC XY: 13716AN XY: 74316
ClinVar
Not reported inComputational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at