1-170971859-C-T
Variant summary
Our verdict is Likely benign. Variant got -2 ACMG points: 2P and 4B. PM2BP4_ModerateBP6_Moderate
The NM_001163629.2(MROH9):c.592C>T(p.Leu198Phe) variant causes a missense change involving the alteration of a non-conserved nucleotide. The variant was absent in control chromosomes in GnomAD project. In-silico tool predicts a benign outcome for this variant. 15/21 in silico tools predict a benign outcome for this variant. Variant has been reported in ClinVar as Likely benign (★).
Frequency
Consequence
NM_001163629.2 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Likely_benign. Variant got -2 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | MANE | Protein | UniProt |
---|---|---|---|---|---|---|---|---|
MROH9 | NM_001163629.2 | c.592C>T | p.Leu198Phe | missense_variant | Exon 8 of 22 | ENST00000367759.9 | NP_001157101.1 | |
MROH9 | NM_025063.4 | c.592C>T | p.Leu198Phe | missense_variant | Exon 8 of 15 | NP_079339.2 | ||
MROH9 | XM_011510005.3 | c.592C>T | p.Leu198Phe | missense_variant | Exon 8 of 21 | XP_011508307.1 | ||
MROH9 | XM_011510006.3 | c.592C>T | p.Leu198Phe | missense_variant | Exon 8 of 21 | XP_011508308.1 |
Ensembl
Frequencies
GnomAD3 genomes Cov.: 32
GnomAD4 exome Cov.: 31
GnomAD4 genome Cov.: 32
ClinVar
Submissions by phenotype
not specified Benign:1
This alteration is classified as likely benign based on a combination of the following: seen in unaffected individuals, population frequency, intact protein function, lack of segregation with disease, co-occurrence, RNA analysis, in silico models, amino acid conservation, lack of disease association in case-control studies, and/or the mechanism of disease or impacted region is inconsistent with a known cause of pathogenicity. -
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at
Publications
No publications associated with this variant yet.