1-183647749-C-T
Variant summary
Our verdict is Benign. Variant got -12 ACMG points: 0P and 12B. BP4_StrongBA1
The NM_203454.3(APOBEC4):c.1033G>A(p.Val345Met) variant causes a missense change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.038 in 1,613,802 control chromosomes in the GnomAD database, including 2,030 homozygotes. In-silico tool predicts a benign outcome for this variant. 14/20 in silico tools predict a benign outcome for this variant. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar. Another nucleotide change resulting in same amino acid change has been previously reported as Likely benignin UniProt.
Frequency
Consequence
NM_203454.3 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Benign. Variant got -12 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | MANE | UniProt |
---|---|---|---|---|---|---|---|
APOBEC4 | NM_203454.3 | c.1033G>A | p.Val345Met | missense_variant | 2/2 | ENST00000308641.6 |
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | TSL | MANE | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|
APOBEC4 | ENST00000308641.6 | c.1033G>A | p.Val345Met | missense_variant | 2/2 | 1 | NM_203454.3 | P1 | |
RGL1 | ENST00000304685.8 | c.-33+11248C>T | intron_variant | 1 | |||||
APOBEC4 | ENST00000481562.1 | n.294G>A | non_coding_transcript_exon_variant | 2/2 | 3 |
Frequencies
GnomAD3 genomes ? AF: 0.0685 AC: 10417AN: 152108Hom.: 620 Cov.: 33
GnomAD3 exomes AF: 0.0434 AC: 10896AN: 251340Hom.: 425 AF XY: 0.0429 AC XY: 5826AN XY: 135844
GnomAD4 exome AF: 0.0348 AC: 50922AN: 1461576Hom.: 1404 Cov.: 30 AF XY: 0.0354 AC XY: 25703AN XY: 727084
GnomAD4 genome ? AF: 0.0686 AC: 10438AN: 152226Hom.: 626 Cov.: 33 AF XY: 0.0675 AC XY: 5022AN XY: 74436
ClinVar
Not reported inComputational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at