1-207506809-A-G
Variant summary
Our verdict is Likely benign. Variant got -2 ACMG points: 2P and 4B. PM2BP4_Strong
The NM_000651.6(CR1):āc.397A>Gā(p.Lys133Glu) variant causes a missense change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.000653 in 1,611,756 control chromosomes in the GnomAD database, including 1 homozygotes. In-silico tool predicts a benign outcome for this variant. 14/19 in silico tools predict a benign outcome for this variant. Variant has been reported in ClinVar as Uncertain significance (ā ).
Frequency
Consequence
NM_000651.6 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Likely_benign. Variant got -2 ACMG points.
Transcripts
RefSeq
Ensembl
Frequencies
GnomAD3 genomes AF: 0.000604 AC: 92AN: 152232Hom.: 0 Cov.: 32
GnomAD3 exomes AF: 0.000286 AC: 71AN: 248602Hom.: 0 AF XY: 0.000296 AC XY: 40AN XY: 134912
GnomAD4 exome AF: 0.000658 AC: 960AN: 1459406Hom.: 1 Cov.: 29 AF XY: 0.000647 AC XY: 470AN XY: 726116
GnomAD4 genome AF: 0.000604 AC: 92AN: 152350Hom.: 0 Cov.: 32 AF XY: 0.000604 AC XY: 45AN XY: 74508
ClinVar
Submissions by phenotype
KNOPS BLOOD GROUP SYSTEM;C1970028:Malaria, susceptibility to Uncertain:1
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Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at