1-32695086-C-T
Variant summary
Our verdict is Benign. Variant got -9 ACMG points: 0P and 9B. BP4_StrongBP6BS2
The NM_030786.3(SYNC):c.1012G>A(p.Asp338Asn) variant causes a missense change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.000341 in 1,613,488 control chromosomes in the GnomAD database, including 6 homozygotes. In-silico tool predicts a benign outcome for this variant. 15/21 in silico tools predict a benign outcome for this variant. Variant has been reported in ClinVar as Likely benign (no stars).
Frequency
Consequence
NM_030786.3 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Benign. Variant got -9 ACMG points.
Transcripts
RefSeq
Ensembl
Frequencies
GnomAD3 genomes AF: 0.000217 AC: 33AN: 152152Hom.: 0 Cov.: 31
GnomAD3 exomes AF: 0.000680 AC: 170AN: 250010Hom.: 3 AF XY: 0.000961 AC XY: 130AN XY: 135298
GnomAD4 exome AF: 0.000354 AC: 518AN: 1461218Hom.: 6 Cov.: 30 AF XY: 0.000469 AC XY: 341AN XY: 726856
GnomAD4 genome AF: 0.000210 AC: 32AN: 152270Hom.: 0 Cov.: 31 AF XY: 0.000201 AC XY: 15AN XY: 74460
ClinVar
Submissions by phenotype
SYNC-related disorder Benign:1
This variant is classified as likely benign based on ACMG/AMP sequence variant interpretation guidelines (Richards et al. 2015 PMID: 25741868, with internal and published modifications). -
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at