1-54717639-C-T
Variant summary
Our verdict is Uncertain significance. Variant got 3 ACMG points: 3P and 0B. PM2PP3
The NM_004623.5(TTC4):c.377C>T(p.Ala126Val) variant causes a missense change. The variant allele was found at a frequency of 0.0000104 in 1,441,088 control chromosomes in the GnomAD database, with no homozygous occurrence. In-silico tool predicts a pathogenic outcome for this variant. Variant has been reported in ClinVar as Uncertain significance (★).
Frequency
Consequence
NM_004623.5 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Uncertain_significance. Variant got 3 ACMG points.
Transcripts
RefSeq
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | TSL | MANE | Protein | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|---|
TTC4 | ENST00000371281.4 | c.377C>T | p.Ala126Val | missense_variant | Exon 3 of 10 | 1 | NM_004623.5 | ENSP00000360329.3 | ||
MROH7-TTC4 | ENST00000414150.6 | n.*79C>T | non_coding_transcript_exon_variant | Exon 26 of 33 | 2 | ENSP00000410192.2 | ||||
MROH7-TTC4 | ENST00000414150.6 | n.*79C>T | 3_prime_UTR_variant | Exon 26 of 33 | 2 | ENSP00000410192.2 |
Frequencies
GnomAD3 genomes Cov.: 32
GnomAD3 exomes AF: 0.0000339 AC: 8AN: 235670Hom.: 0 AF XY: 0.0000470 AC XY: 6AN XY: 127688
GnomAD4 exome AF: 0.0000104 AC: 15AN: 1441088Hom.: 0 Cov.: 30 AF XY: 0.0000112 AC XY: 8AN XY: 716460
GnomAD4 genome Cov.: 32
ClinVar
Submissions by phenotype
not specified Uncertain:1
The c.377C>T (p.A126V) alteration is located in exon 3 (coding exon 3) of the TTC4 gene. This alteration results from a C to T substitution at nucleotide position 377, causing the alanine (A) at amino acid position 126 to be replaced by a valine (V). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear. -
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at