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GeneBe

10-45374099-TGCGGGGGCGGGGGCGGGGGCGGGG-TGCGGGG

Variant summary

Our verdict is Uncertain significance. Variant got 0 ACMG points: 0P and 0B.

The variant allele was found at a frequency of 0.000921 in 821,978 control chromosomes in the GnomAD database, including 3 homozygotes. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar.

Frequency

Genomes: 𝑓 0.00069 ( 0 hom., cov: 22)
Exomes 𝑓: 0.00097 ( 3 hom. )

Consequence

Unknown

Scores

Not classified

Clinical Significance

Not reported in ClinVar

Conservation

PhyloP100: 0.984
Variant links:

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ACMG classification

Verdict is Uncertain_significance. Variant got 0 ACMG points.

Transcripts

RefSeq

Gene Transcript HGVSc HGVSp Effect #exon/exons MANE UniProt

Ensembl

Gene Transcript HGVSc HGVSp Effect #exon/exons TSL MANE Appris UniProt

Frequencies

GnomAD3 genomes
AF:
0.000687
AC:
103
AN:
149892
Hom.:
0
Cov.:
22
show subpopulations
Gnomad AFR
AF:
0.000416
Gnomad AMI
AF:
0.00
Gnomad AMR
AF:
0.000132
Gnomad ASJ
AF:
0.00
Gnomad EAS
AF:
0.00
Gnomad SAS
AF:
0.00
Gnomad FIN
AF:
0.000194
Gnomad MID
AF:
0.00
Gnomad NFE
AF:
0.00122
Gnomad OTH
AF:
0.00
GnomAD4 exome
AF:
0.000973
AC:
654
AN:
671984
Hom.:
3
AF XY:
0.000946
AC XY:
308
AN XY:
325616
show subpopulations
Gnomad4 AFR exome
AF:
0.000299
Gnomad4 AMR exome
AF:
0.000141
Gnomad4 ASJ exome
AF:
0.00
Gnomad4 EAS exome
AF:
0.0000935
Gnomad4 SAS exome
AF:
0.0000786
Gnomad4 FIN exome
AF:
0.0000967
Gnomad4 NFE exome
AF:
0.00113
Gnomad4 OTH exome
AF:
0.000524
GnomAD4 genome
AF:
0.000687
AC:
103
AN:
149994
Hom.:
0
Cov.:
22
AF XY:
0.000752
AC XY:
55
AN XY:
73144
show subpopulations
Gnomad4 AFR
AF:
0.000415
Gnomad4 AMR
AF:
0.000132
Gnomad4 ASJ
AF:
0.00
Gnomad4 EAS
AF:
0.00
Gnomad4 SAS
AF:
0.00
Gnomad4 FIN
AF:
0.000194
Gnomad4 NFE
AF:
0.00122
Gnomad4 OTH
AF:
0.00

ClinVar

Not reported in ClinVar

Computational scores

Source: dbNSFP v4.3

Name
Calibrated prediction
Score
Prediction

Splicing

Find out detailed SpliceAI scores and Pangolin per-transcript scores at spliceailookup.broadinstitute.org

Publications

LitVar

Below is the list of publications found by LitVar. It may be empty.

Other links and lift over

dbSNP: rs59439148; hg19: chr10-45869547; API