10-81875485-C-T
Variant summary
Our verdict is Uncertain significance. Variant got 0 ACMG points: 2P and 2B. PM2BP4_Moderate
The NM_001010848.4(NRG3):c.145C>T(p.Pro49Ser) variant causes a missense change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.000000746 in 1,341,098 control chromosomes in the GnomAD database, with no homozygous occurrence. In-silico tool predicts a benign outcome for this variant. Variant has been reported in ClinVar as Uncertain significance (★).
Frequency
Consequence
NM_001010848.4 missense
Scores
Clinical Significance
Conservation
Genome browser will be placed here
ACMG classification
Verdict is Uncertain_significance. Variant got 0 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | MANE | Protein | UniProt |
---|---|---|---|---|---|---|---|---|
NRG3 | NM_001010848.4 | c.145C>T | p.Pro49Ser | missense_variant | 1/9 | ENST00000372141.7 | NP_001010848.2 |
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | TSL | MANE | Protein | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|---|
NRG3 | ENST00000372141.7 | c.145C>T | p.Pro49Ser | missense_variant | 1/9 | 1 | NM_001010848.4 | ENSP00000361214.2 | ||
NRG3 | ENST00000404547.5 | c.145C>T | p.Pro49Ser | missense_variant | 1/10 | 1 | ENSP00000384796.1 |
Frequencies
GnomAD3 genomes Cov.: 31
GnomAD4 exome AF: 7.46e-7 AC: 1AN: 1341098Hom.: 0 Cov.: 31 AF XY: 0.00000152 AC XY: 1AN XY: 659120
GnomAD4 genome Cov.: 31
ClinVar
Submissions by phenotype
not specified Uncertain:1
Uncertain significance, criteria provided, single submitter | clinical testing | Ambry Genetics | Dec 16, 2023 | The c.145C>T (p.P49S) alteration is located in exon 1 (coding exon 1) of the NRG3 gene. This alteration results from a C to T substitution at nucleotide position 145, causing the proline (P) at amino acid position 49 to be replaced by a serine (S). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear. - |
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at
Publications
No publications associated with this variant yet.