11-105007200-T-C
Variant summary
Our verdict is Benign. Variant got -12 ACMG points: 0P and 12B. BP4_StrongBA1
The NM_004347.5(CASP5):āc.316A>Gā(p.Thr106Ala) variant causes a missense change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.445 in 1,612,524 control chromosomes in the GnomAD database, including 162,981 homozygotes. In-silico tool predicts a benign outcome for this variant. 14/20 in silico tools predict a benign outcome for this variant. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar. Another nucleotide change resulting in the same amino acid substitution has been previously reported as Likely benign in UniProt.
Frequency
Consequence
NM_004347.5 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Benign. Variant got -12 ACMG points.
Transcripts
RefSeq
Ensembl
Frequencies
GnomAD3 genomes AF: 0.485 AC: 73689AN: 151856Hom.: 18579 Cov.: 32
GnomAD3 exomes AF: 0.434 AC: 108969AN: 251040Hom.: 24781 AF XY: 0.427 AC XY: 57861AN XY: 135642
GnomAD4 exome AF: 0.441 AC: 643673AN: 1460550Hom.: 144375 Cov.: 40 AF XY: 0.437 AC XY: 317390AN XY: 726630
GnomAD4 genome AF: 0.486 AC: 73784AN: 151974Hom.: 18606 Cov.: 32 AF XY: 0.484 AC XY: 35925AN XY: 74254
ClinVar
Not reported inComputational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at