11-126292967-C-T
Variant summary
Our verdict is Benign. Variant got -15 ACMG points: 0P and 15B. BP4_StrongBP6_ModerateBP7BA1
The NM_001318777.2(TIRAP):c.558C>T(p.Ala186Ala) variant causes a synonymous change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.22 in 1,613,986 control chromosomes in the GnomAD database, including 41,685 homozygotes. In-silico tool predicts a benign outcome for this variant. Variant has been reported in ClinVar as Benign (★).
Frequency
Consequence
NM_001318777.2 synonymous
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Benign. Variant got -15 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | MANE | Protein | UniProt |
---|---|---|---|---|---|---|---|---|
TIRAP | NM_001318777.2 | c.558C>T | p.Ala186Ala | synonymous_variant | Exon 4 of 5 | ENST00000392679.6 | NP_001305706.1 | |
TIRAP | NM_001318776.2 | c.558C>T | p.Ala186Ala | synonymous_variant | Exon 4 of 4 | NP_001305705.1 | ||
TIRAP | NM_148910.3 | c.558C>T | p.Ala186Ala | synonymous_variant | Exon 5 of 5 | NP_683708.1 | ||
TIRAP | NM_001039661.2 | c.558C>T | p.Ala186Ala | synonymous_variant | Exon 5 of 6 | NP_001034750.1 |
Ensembl
Frequencies
GnomAD3 genomes AF: 0.187 AC: 28420AN: 152108Hom.: 2925 Cov.: 33
GnomAD3 exomes AF: 0.178 AC: 44631AN: 250232Hom.: 4659 AF XY: 0.183 AC XY: 24738AN XY: 135490
GnomAD4 exome AF: 0.223 AC: 325954AN: 1461760Hom.: 38757 Cov.: 41 AF XY: 0.222 AC XY: 161407AN XY: 727166
GnomAD4 genome AF: 0.187 AC: 28436AN: 152226Hom.: 2928 Cov.: 33 AF XY: 0.180 AC XY: 13397AN XY: 74414
ClinVar
Submissions by phenotype
not specified Benign:1
This variant is classified as Benign based on local population frequency. This variant was detected in 23% of patients studied by a panel of primary immunodeficiencies. Number of patients: 20. Only high quality variants are reported. -
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at