11-4545283-C-A
Variant summary
Our verdict is Benign. Variant got -10 ACMG points: 0P and 10B. BP4_StrongBP6BP7BS2
The NM_001004137.1(OR52M1):c.93C>A(p.Ile31Ile) variant causes a synonymous change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.00839 in 1,614,110 control chromosomes in the GnomAD database, including 87 homozygotes. In-silico tool predicts a benign outcome for this variant. Variant has been reported in ClinVar as Benign (no stars).
Frequency
Consequence
NM_001004137.1 synonymous
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Benign. Variant got -10 ACMG points.
Transcripts
RefSeq
Ensembl
Frequencies
GnomAD3 genomes AF: 0.00511 AC: 777AN: 152172Hom.: 3 Cov.: 32
GnomAD3 exomes AF: 0.00450 AC: 1130AN: 251040Hom.: 4 AF XY: 0.00453 AC XY: 615AN XY: 135662
GnomAD4 exome AF: 0.00873 AC: 12768AN: 1461820Hom.: 84 Cov.: 31 AF XY: 0.00848 AC XY: 6164AN XY: 727220
GnomAD4 genome AF: 0.00510 AC: 777AN: 152290Hom.: 3 Cov.: 32 AF XY: 0.00466 AC XY: 347AN XY: 74470
ClinVar
Submissions by phenotype
OR52M1-related disorder Benign:1
This variant is classified as benign based on ACMG/AMP sequence variant interpretation guidelines (Richards et al. 2015 PMID: 25741868, with internal and published modifications). -
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at