12-111660644-C-T
Variant summary
Our verdict is Uncertain significance. Variant got 3 ACMG points: 3P and 0B. PM2PP3
The NM_006768.5(BRAP):c.928G>A(p.Glu310Lys) variant causes a missense change involving the alteration of a conserved nucleotide. The variant allele was found at a frequency of 0.0000282 in 1,455,826 control chromosomes in the GnomAD database, with no homozygous occurrence. In-silico tool predicts a pathogenic outcome for this variant. Variant has been reported in ClinVar as Uncertain significance (★).
Frequency
Consequence
NM_006768.5 missense
Scores
Clinical Significance
Conservation
Genome browser will be placed here
ACMG classification
Verdict is Uncertain_significance. Variant got 3 ACMG points.
Transcripts
RefSeq
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | TSL | MANE | Protein | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|---|
BRAP | ENST00000419234.9 | c.928G>A | p.Glu310Lys | missense_variant | Exon 7 of 12 | 1 | NM_006768.5 | ENSP00000403524.3 | ||
BRAP | ENST00000327551.6 | c.838G>A | p.Glu280Lys | missense_variant | Exon 7 of 12 | 1 | ENSP00000330813.5 | |||
BRAP | ENST00000547043.1 | n.832G>A | non_coding_transcript_exon_variant | Exon 3 of 8 | 3 |
Frequencies
GnomAD3 genomes Cov.: 32
GnomAD3 exomes AF: 0.0000161 AC: 4AN: 248432Hom.: 0 AF XY: 0.00000743 AC XY: 1AN XY: 134546
GnomAD4 exome AF: 0.0000282 AC: 41AN: 1455826Hom.: 0 Cov.: 29 AF XY: 0.0000221 AC XY: 16AN XY: 724434
GnomAD4 genome Cov.: 32
ClinVar
Submissions by phenotype
not specified Uncertain:1
The c.928G>A (p.E310K) alteration is located in exon 7 (coding exon 7) of the BRAP gene. This alteration results from a G to A substitution at nucleotide position 928, causing the glutamic acid (E) at amino acid position 310 to be replaced by a lysine (K). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear. -
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at