12-11268104-G-C
Variant summary
Our verdict is Uncertain significance. Variant got 0 ACMG points: 4P and 4B. PM2PM5BP4_Strong
The NM_001394862.1(PRB3):c.145C>G(p.Arg49Gly) variant causes a missense change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.00000137 in 1,457,174 control chromosomes in the GnomAD database, with no homozygous occurrence. In-silico tool predicts a benign outcome for this variant. 13/17 in silico tools predict a benign outcome for this variant. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar. Another variant affecting the same amino acid position, but resulting in a different missense (i.e. R49C) has been classified as Pathogenic.
Frequency
Consequence
NM_001394862.1 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Uncertain_significance. Variant got 0 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | MANE | UniProt |
---|---|---|---|---|---|---|---|
PRB3 | NM_001394862.1 | c.145C>G | p.Arg49Gly | missense_variant | 3/4 | ENST00000538488.3 | |
LOC107987435 | XR_007063209.1 | n.761-9366G>C | intron_variant, non_coding_transcript_variant | ||||
PRB3 | NM_006249.5 | c.145C>G | p.Arg49Gly | missense_variant | 3/5 |
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | TSL | MANE | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|
PRB3 | ENST00000538488.3 | c.145C>G | p.Arg49Gly | missense_variant | 3/4 | 5 | NM_001394862.1 | P1 | |
PRB3 | ENST00000539835.1 | n.152C>G | non_coding_transcript_exon_variant | 2/2 | 2 |
Frequencies
GnomAD3 genomes ? AF: 0.00 AC: 0AN: 143676Hom.: 0 Cov.: 28 FAILED QC
GnomAD3 exomes AF: 0.00000401 AC: 1AN: 249400Hom.: 0 AF XY: 0.00 AC XY: 0AN XY: 135256
GnomAD4 exome AF: 0.00000137 AC: 2AN: 1457174Hom.: 0 Cov.: 41 AF XY: 0.00 AC XY: 0AN XY: 724810
GnomAD4 genome ? Data not reliable, filtered out with message: AC0 AF: 0.00 AC: 0AN: 143676Hom.: 0 Cov.: 28 AF XY: 0.00 AC XY: 0AN XY: 69974
ClinVar
Not reported inComputational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at