12-49962391-TGGGG-TGGGGGGG
Variant summary
Our verdict is Likely benign. Variant got -4 ACMG points: 0P and 4B. BS2
The NM_001651.4(AQP5):c.363+19_363+21dupGGG variant causes a intron change involving the alteration of a non-conserved nucleotide. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar.
Frequency
Genomes: 𝑓 0.000033 ( 0 hom., cov: 0)
Exomes 𝑓: 0.0000029 ( 0 hom. )
Consequence
AQP5
NM_001651.4 intron
NM_001651.4 intron
Scores
Not classified
Clinical Significance
Not reported in ClinVar
Conservation
PhyloP100: 0.227
Genes affected
AQP5 (HGNC:638): (aquaporin 5) Aquaporin 5 (AQP5) is a water channel protein. Aquaporins are a family of small integral membrane proteins related to the major intrinsic protein (MIP or AQP0). Aquaporin 5 plays a role in the generation of saliva, tears and pulmonary secretions. AQP0, AQP2, AQP5, and AQP6 are closely related and all map to 12q13. [provided by RefSeq, Jul 2008]
Genome browser will be placed here
ACMG classification
Classification made for transcript
Verdict is Likely_benign. Variant got -4 ACMG points.
BS2
High AC in GnomAd4 at 5 AD gene.
Transcripts
RefSeq
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | TSL | MANE | Protein | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|---|
AQP5 | ENST00000293599.7 | c.363+11_363+12insGGG | intron_variant | Intron 1 of 3 | 1 | NM_001651.4 | ENSP00000293599.5 | |||
AQP5-AS1 | ENST00000550214.1 | n.258+275_258+276insCCC | intron_variant | Intron 1 of 1 | 2 | |||||
AQP5-AS1 | ENST00000550530.1 | n.117+275_117+276insCCC | intron_variant | Intron 1 of 2 | 3 | |||||
AQP5-AS1 | ENST00000552379.1 | n.256+275_256+276insCCC | intron_variant | Intron 1 of 2 | 3 |
Frequencies
GnomAD3 genomes AF: 0.0000334 AC: 5AN: 149906Hom.: 0 Cov.: 0
GnomAD3 genomes
AF:
AC:
5
AN:
149906
Hom.:
Cov.:
0
Gnomad AFR
AF:
Gnomad AMI
AF:
Gnomad AMR
AF:
Gnomad ASJ
AF:
Gnomad EAS
AF:
Gnomad SAS
AF:
Gnomad FIN
AF:
Gnomad MID
AF:
Gnomad NFE
AF:
Gnomad OTH
AF:
GnomAD4 exome AF: 0.00000288 AC: 4AN: 1387220Hom.: 0 Cov.: 0 AF XY: 0.00000292 AC XY: 2AN XY: 685954
GnomAD4 exome
AF:
AC:
4
AN:
1387220
Hom.:
Cov.:
0
AF XY:
AC XY:
2
AN XY:
685954
Gnomad4 AFR exome
AF:
Gnomad4 AMR exome
AF:
Gnomad4 ASJ exome
AF:
Gnomad4 EAS exome
AF:
Gnomad4 SAS exome
AF:
Gnomad4 FIN exome
AF:
Gnomad4 NFE exome
AF:
Gnomad4 OTH exome
AF:
GnomAD4 genome AF: 0.0000334 AC: 5AN: 149906Hom.: 0 Cov.: 0 AF XY: 0.0000547 AC XY: 4AN XY: 73174
GnomAD4 genome
AF:
AC:
5
AN:
149906
Hom.:
Cov.:
0
AF XY:
AC XY:
4
AN XY:
73174
Gnomad4 AFR
AF:
Gnomad4 AMR
AF:
Gnomad4 ASJ
AF:
Gnomad4 EAS
AF:
Gnomad4 SAS
AF:
Gnomad4 FIN
AF:
Gnomad4 NFE
AF:
Gnomad4 OTH
AF:
ClinVar
Not reported inComputational scores
Source:
Name
Calibrated prediction
Score
Prediction
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at