12-52243061-A-G
Variant summary
Our verdict is Uncertain significance. Variant got 0 ACMG points: 2P and 2B. PM2BP4_Moderate
The NM_005556.4(KRT7):c.908A>G(p.Asn303Ser) variant causes a missense change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.000000684 in 1,461,664 control chromosomes in the GnomAD database, with no homozygous occurrence. In-silico tool predicts a benign outcome for this variant. 15/21 in silico tools predict a benign outcome for this variant. Variant has been reported in ClinVar as Uncertain significance (★).
Frequency
Consequence
NM_005556.4 missense
Scores
Clinical Significance
Conservation
Genome browser will be placed here
ACMG classification
Verdict is Uncertain_significance. Variant got 0 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | MANE | UniProt |
---|---|---|---|---|---|---|---|
KRT7 | NM_005556.4 | c.908A>G | p.Asn303Ser | missense_variant | 6/9 | ENST00000331817.6 | |
KRT7 | XM_011538325.3 | c.908A>G | p.Asn303Ser | missense_variant | 6/8 | ||
KRT7 | XM_047428827.1 | c.908A>G | p.Asn303Ser | missense_variant | 6/7 | ||
KRT7 | XM_017019294.2 | c.377A>G | p.Asn126Ser | missense_variant | 4/7 |
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | TSL | MANE | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|
KRT7 | ENST00000331817.6 | c.908A>G | p.Asn303Ser | missense_variant | 6/9 | 1 | NM_005556.4 | P1 |
Frequencies
GnomAD3 genomes ? Cov.: 32
GnomAD4 exome AF: 6.84e-7 AC: 1AN: 1461664Hom.: 0 Cov.: 30 AF XY: 0.00000138 AC XY: 1AN XY: 727154
GnomAD4 genome ? Cov.: 32
ClinVar
Submissions by phenotype
not specified Uncertain:1
Uncertain significance, criteria provided, single submitter | clinical testing | Ambry Genetics | May 18, 2022 | The c.908A>G (p.N303S) alteration is located in exon 6 (coding exon 6) of the KRT7 gene. This alteration results from a A to G substitution at nucleotide position 908, causing the asparagine (N) at amino acid position 303 to be replaced by a serine (S). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear. - |
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at
Publications
No publications associated with this variant yet.