12-57013652-T-C
Variant summary
Our verdict is Uncertain significance. Variant got 0 ACMG points: 2P and 2B. PM2BP4_Moderate
The NM_013251.4(TAC3):āc.134A>Gā(p.Gln45Arg) variant causes a missense change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.0000285 in 1,613,036 control chromosomes in the GnomAD database, with no homozygous occurrence. In-silico tool predicts a benign outcome for this variant. 16/21 in silico tools predict a benign outcome for this variant. Variant has been reported in ClinVar as Uncertain significance (ā ).
Frequency
Consequence
NM_013251.4 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Uncertain_significance. Variant got 0 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | MANE | Protein | UniProt |
---|---|---|---|---|---|---|---|---|
TAC3 | NM_013251.4 | c.134A>G | p.Gln45Arg | missense_variant | Exon 3 of 7 | ENST00000458521.7 | NP_037383.1 |
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | TSL | MANE | Protein | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|---|
TAC3 | ENST00000458521.7 | c.134A>G | p.Gln45Arg | missense_variant | Exon 3 of 7 | 1 | NM_013251.4 | ENSP00000404056.2 | ||
TAC3 | ENST00000300108.7 | n.134A>G | non_coding_transcript_exon_variant | Exon 3 of 9 | 2 | ENSP00000300108.3 | ||||
TAC3 | ENST00000379411.6 | n.134A>G | non_coding_transcript_exon_variant | Exon 3 of 8 | 2 | ENSP00000368721.2 | ||||
TAC3 | ENST00000393867.5 | n.134A>G | non_coding_transcript_exon_variant | Exon 3 of 10 | 2 | ENSP00000377445.1 |
Frequencies
GnomAD3 genomes AF: 0.00000657 AC: 1AN: 152136Hom.: 0 Cov.: 32
GnomAD3 exomes AF: 0.0000401 AC: 10AN: 249184Hom.: 0 AF XY: 0.0000669 AC XY: 9AN XY: 134558
GnomAD4 exome AF: 0.0000308 AC: 45AN: 1460900Hom.: 0 Cov.: 31 AF XY: 0.0000358 AC XY: 26AN XY: 726580
GnomAD4 genome AF: 0.00000657 AC: 1AN: 152136Hom.: 0 Cov.: 32 AF XY: 0.0000135 AC XY: 1AN XY: 74322
ClinVar
Submissions by phenotype
Hypogonadotropic hypogonadism 10 with or without anosmia Uncertain:1
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Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at